Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0256 ATGGATTCACGGGAACCGCCTCAGCCCCCTCACCCGTCGCAACTACAGTCGATGGCACAAGCACAACCACCGTCGACGATGCCAAGCATGATGATGGGACCAACTTCGTATGGTTCTGCCATGCCGAACCCGAACACATCTCCCATGATCAGCCCCAATTCGACGGCTGCGATGATGGCCCCTGCCACCGCCGCACGATTCCCTTTCAACACCGTGGTTCCGCAACCCCCTGCTCCGTCTAAACCTATGGAACATCTGAACAACAATGTTAGTCCTTTCGATGGGTCATCGTCCGCGATGAGGTCATGTGGGTTTAGTATGGATCCTACAAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGTCTCCCACGCCCATGTCTACTTCTGCTGGTCAAGGAGATTCGAGTGGTACACCTTCGACGGAACCTGGAACGAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAAACAGCTGGATGCTCTTGGAGCTGGCGGTATTGGTTTTACTCCGCACGTAATATTAGTAAAAGCTGGTGAGGACATTGCTGGCAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCTGCAATTGGTGCAATCAGCAATGTTACCCTTAGACAGGCAACAATTTCTGGCGGCACTGTGCAATATGAGGGCCGATTTGAGATCATATCTCTATCAGGTTCTTTCCTGCCATGTGATGATAATGGTCGTAACAGAGCAGGTGGTTTTACTGTGTCTCTTGCGGGGTCAGATGGTAAAGTTTTAGGTGGTGGAGTTGCTGGAATGCTAATCGCCGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCTCAAATATTCTGAAATCAGGGGCTTCTTCAGCACCAGGCTCCCAAATGTTAAATTTTGGTGCACCTACTACTTCTACTAGCCCTACCTCTCAAGGCCCTTCATCTGAGTCCTCTGAAGAGAATGACAATAATGGTGATTTTAATAGGGGACCTGCACTCTACAATAATAATAATACTAGCCAGCCGCCCATTCACAATATGCAGCAGATGTATCATCCTCAACTGTGGGCTGGTCAAACCCAGCAGTGA 1152 0.4974 MDSREPPQPPHPSQLQSMAQAQPPSTMPSMMMGPTSYGSAMPNPNTSPMISPNSTAAMMAPATAARFPFNTVVPQPPAPSKPMEHLNNNVSPFDGSSSAMRSCGFSMDPTKKKRGRPRKYSPDGNIALGLSPTPMSTSAGQGDSSGTPSTEPGTKKHRGRPPGSGKKQLDALGAGGIGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQATISGGTVQYEGRFEIISLSGSFLPCDDNGRNRAGGFTVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSSNILKSGASSAPGSQMLNFGAPTTSTSPTSQGPSSESSEENDNNGDFNRGPALYNNNNTSQPPIHNMQQMYHPQLWAGQTQQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0256 383 Gene3D - 181 305 - -
Lele54g0256 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 294 - -
Lele54g0256 383 MobiDBLite consensus disorder prediction 130 152 - -
Lele54g0256 383 MobiDBLite consensus disorder prediction 1 55 - -
Lele54g0256 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 293 IPR005175 -
Lele54g0256 383 MobiDBLite consensus disorder prediction 74 172 - -
Lele54g0256 383 CDD DUF296 180 293 IPR005175 -
Lele54g0256 383 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Lele54g0256 383 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Lele54g0256 383 MobiDBLite consensus disorder prediction 82 104 - -
Lele54g0256 383 MobiDBLite consensus disorder prediction 306 383 - -
Lele54g0256 383 ProSiteProfiles PPC domain profile profile. 175 315 IPR005175 -
Lele54g0256 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 343 IPR039605 GO:0003680
Lele54g0256 383 MobiDBLite consensus disorder prediction 14 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0256 Lele-ChrLele54 2162567 2169254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0256 81 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.590 3.19e-74 235