Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0250 ATGGACCCATCTGCAGCCAGCTGGTTTTCTGATTTGGAAATGGATGATTACCGTCTGTTTCCGATGCAGTGCCACCAGATAGATGATGATCAGTTTATTTCACAGGACATAGCCAGTGTTCTTCAGGGACAATCGTATTTGCAGCCATCTTTGTCTTGTGAGAGCTATTCTTCGTATAATTCATGCACTGCTGAAACTAACCTTGATGGGGCTTCCTTGCAGTTCAAATCCACCATTTCTGAACCTTCATCTTCTTCTTCTCAACTTCTGTCTTTTGATAACTCTAATTATAACACTACTACTTCCTCTACCAACAGCACCAACCTCTTTAACGGGTTTGACTCAACGACCTTGAAGCCAAAGGATCATATACAGTATTTCTTAGCTCAATCCCCTAATGGTGGATTTTCCCAAAATCACAACTTTGAACCCAATTCCACACAAAGCATCAATAAGCCTATCCCTCACGTCCGTGATCACATCATGGCCGAGAGAAAACGAAGAGAAAAGCTCACCCAGAGCTTCATTACTCTTTCAGCTCTTGTCCCTGGCCTCAAAAAGATGGACAAGAATTCGGTGCTTGGGGACTCTATCAAGTACGTGAAGGAGCTGAAGGAGAGACTGACGTTGCTGGAAGAACAAAACAAGAAAAGAAAAAGGGTTGAATCAGTGGTTAGGGTGAAGAAAACGAAACTGTACGAGGATGATGATGAAGAAGAAGGAGTTGCTCAAGTGGAAGCAAGAGTGTTGGAGAAGGACGTGCTGGTTCGGATCCACTGCCAGAAACAGAAGGGACTTCTGGTGAAAATACTCTCAGAGATTCAGAATCTTCATCTTTTTGTTGTCAACAGCAGCGTTTTGCCATTCGGGGACTCCAATCTTGTCGTCACCATTGTTGCTCAGATGGGGGAAGATTGCAGCTTGACGATGAGTGATCTCGTAAAGAACCTACGAATGGCTATTTTAAGTGTCTGTGACTGA 981 0.4373 MDPSAASWFSDLEMDDYRLFPMQCHQIDDDQFISQDIASVLQGQSYLQPSLSCESYSSYNSCTAETNLDGASLQFKSTISEPSSSSSQLLSFDNSNYNTTTSSTNSTNLFNGFDSTTLKPKDHIQYFLAQSPNGGFSQNHNFEPNSTQSINKPIPHVRDHIMAERKRREKLTQSFITLSALVPGLKKMDKNSVLGDSIKYVKELKERLTLLEEQNKKRKRVESVVRVKKTKLYEDDDEEEGVAQVEARVLEKDVLVRIHCQKQKGLLVKILSEIQNLHLFVVNSSVLPFGDSNLVVTIVAQMGEDCSLTMSDLVKNLRMAILSVCD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0250 326 Coils Coil 201 221 - -
Lele54g0250 326 Pfam Helix-loop-helix DNA-binding domain 160 204 IPR011598 GO:0046983
Lele54g0250 326 PANTHER BHLH TRANSCRIPTION FACTOR 46 321 - -
Lele54g0250 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 217 IPR036638 GO:0046983
Lele54g0250 326 SMART finulus 161 210 IPR011598 GO:0046983
Lele54g0250 326 Gene3D - 156 221 IPR036638 GO:0046983
Lele54g0250 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0250 Lele-ChrLele54 2103808 2105318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0250 5 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.047 4.27e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g0250 HLH 5.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0403 49 2338478 2339860 Lele54g0250 54 2103808 2105318 CCT
Lele54g0250 54 2103808 2105318 Lele55g1240 55 18966698 18972195 hybridization
Lele54g0250 54 2103808 2105318 Lele56g1188 56 15336524 15341891 hybridization