Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0249 ATGGAAATTGCCTCCGCCATGTACTCATCTGCCATGGACGATACCACATTGTTTGAGCAGTTCCCCATGGATTATTTCGATGGCATTGATTTCCAAGCCTTGGTCTCCGACAGTGATTCCTGTTATGAGCGTCCCAACTCCAACAGAAAACAGAATCCTCACTCTATGATTTCCCCACCAGCACCAAGAGTACTCAAGACCAATAAGTCTGCTTCTGCTTCTGCTTCCAATTCTTTGCCCACACTCATTTCTTTTGACTCCTCCAATACGACGCACCAGTTTTCCAATGTGAAGCTTGAAACCACGAATGAGAACGTTTTGAATTTTGCGTCTTTAAGCAGTCAAGGAGCATACTATGAAGACATCAATTTCGTACAACAAGCTCAGAAACCGACGAACGTGACGAGAAATCCAATCCAAGCTCAAGATCATGTCCTGTCCGAAAGAAGACGAAGGGAAAAGCTCAACCAGAAGTTCATTGCTCTCTCCTCCATCATTCCTGGTCTCAAGAAGATGGACAAGGCGTCAGTTTTGGGAGATGCTATAGAGTATGTAAAACAACTCAAGGAACACGAGAAGATTCTGGAAGAGCAGGTCGCCATGAGAACAAAGGAATATGCAGTCTTAACTAGAAGATCTATTCTCTTTGCCGACAATGATAACTCGCCGGCCGATGAAACTTCCGACCACCCATTAGCAGAAATCGAAGCCAGAGTTTTGGGTAAAGATGTGCTCATCAGAATCCAATGCGAGAAACACAACGAGTGTGAGGCAAAAATACTGAGAGAATTACAAAACCTTCGTCTCACTGTTCAAAGCAGTAGCATCTTGCCATTTGGCGAAACCACACTATGTATAACTATCATAGCTCAGATGGACAAGGAGCACAGTATGACAGCAAAGGATTTCGTGGCAAGTTTGAGGAAGGCATTGACATTATTGGATCGTGCATAG 954 0.4413 MEIASAMYSSAMDDTTLFEQFPMDYFDGIDFQALVSDSDSCYERPNSNRKQNPHSMISPPAPRVLKTNKSASASASNSLPTLISFDSSNTTHQFSNVKLETTNENVLNFASLSSQGAYYEDINFVQQAQKPTNVTRNPIQAQDHVLSERRRREKLNQKFIALSSIIPGLKKMDKASVLGDAIEYVKQLKEHEKILEEQVAMRTKEYAVLTRRSILFADNDNSPADETSDHPLAEIEARVLGKDVLIRIQCEKHNECEAKILRELQNLRLTVQSSSILPFGETTLCITIIAQMDKEHSMTAKDFVASLRKALTLLDRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0249 317 MobiDBLite consensus disorder prediction 40 55 - -
Lele54g0249 317 MobiDBLite consensus disorder prediction 40 71 - -
Lele54g0249 317 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Lele54g0249 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 213 IPR036638 GO:0046983
Lele54g0249 317 SMART finulus 145 194 IPR011598 GO:0046983
Lele54g0249 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Lele54g0249 317 Gene3D - 136 200 IPR036638 GO:0046983
Lele54g0249 317 PANTHER BHLH TRANSCRIPTION FACTOR 11 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0249 Lele-ChrLele54 2091292 2092448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0249 135 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.727 1.73e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g0249 HLH 2.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0431 50 2452972 2454245 Lele54g0249 54 2091292 2092448 CCT
Lele51g0412 51 2379193 2380656 Lele54g0249 54 2091292 2092448 CCT
Lele52g0429 52 2524146 2527913 Lele54g0249 54 2091292 2092448 CCT
Lele54g0249 54 2091292 2092448 Lele55g1241 55 18979808 18980969 hybridization
Lele54g0249 54 2091292 2092448 Lele56g1189 56 15357304 15358465 hybridization