Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele54g0235 | ATGGGTCTTCCTTCTGATTCTACTTCCTCAGCCCTCGAGCTTGTTCTAGGGCTTGGTTCCACTACTACTCCAAAGAAATTACCTTCCTTTAATAATAATCTCACTCTTACCGGTGGTGTTTGTGAGCCTTCTTTGACGTTGGCTCTCTCCGGCGACGCTTACAAGATTGATGTGAATATCAAAGCTAATAATAATTCTGAGGAAACGCCTCTTGATCACTTGTCTCGCCAGACTTCTTCGCCTCACAGTGTGGTTTCGTCCTTCTCCGGTGGTGGTGGTGGGAGGGTGAAGAGGGAAAGAGATCTCAGCAGCGAGCTGGAGGCTGAGGCTGAGAGGGTTTCTTCCAGAGTAAGCGACGAAGATGAAGATGGCACTAATGCCAGGAAGAAGCTGAGGCTCACCAAGGAACAATCTGCTCTCCTCGAGGAAAGCTTCAAACAGCACAGCACTCTTAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTGAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTGCAGAAAGAGCTGCTAGAGCTGAAGGCACTGAAGCTATCTCAGCCGTTGTACGTGCCGATGCCGGCGGCGACGCTCACCATGTGCCCGTCTTGCGAGAGGCTGGGCGGCTTCGCCGGGGACGCCGTCGCAGCTTCCAAGAAGACCCCATTCTCCATGACTCCCAAGTCCCCTCATCACCTACTGTACAACCCCTTCAACAACCCTTCCGCTGCATGTTGA | 840 | 0.5202 | MGLPSDSTSSALELVLGLGSTTTPKKLPSFNNNLTLTGGVCEPSLTLALSGDAYKIDVNIKANNNSEETPLDHLSRQTSSPHSVVSSFSGGGGGRVKRERDLSSELEAEAERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELLELKALKLSQPLYVPMPAATLTMCPSCERLGGFAGDAVAASKKTPFSMTPKSPHHLLYNPFNNPSAAC | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele54g0235 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 124 | 184 | IPR001356 | GO:0003677 | |
| Lele54g0235 | 279 | Coils | Coil | 190 | 217 | - | - | |
| Lele54g0235 | 279 | Pfam | Homeodomain | 128 | 182 | IPR001356 | GO:0003677 | |
| Lele54g0235 | 279 | SMART | HOX_1 | 126 | 188 | IPR001356 | GO:0003677 | |
| Lele54g0235 | 279 | CDD | homeodomain | 128 | 185 | IPR001356 | GO:0003677 | |
| Lele54g0235 | 279 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
| Lele54g0235 | 279 | SMART | halz | 184 | 227 | IPR003106 | GO:0006355|GO:0043565 | |
| Lele54g0235 | 279 | ProSitePatterns | 'Homeobox' domain signature. | 159 | 182 | IPR017970 | GO:0000981|GO:0006355 | |
| Lele54g0235 | 279 | Coils | Coil | 96 | 116 | - | - | |
| Lele54g0235 | 279 | Pfam | Homeobox associated leucine zipper | 184 | 218 | IPR003106 | GO:0006355|GO:0043565 | |
| Lele54g0235 | 279 | FunFam | Homeobox-leucine zipper protein 18 | 113 | 189 | - | - | |
| Lele54g0235 | 279 | Gene3D | - | 132 | 182 | - | - | |
| Lele54g0235 | 279 | MobiDBLite | consensus disorder prediction | 67 | 130 | - | - | |
| Lele54g0235 | 279 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 30 | 262 | - | - | |
| Lele54g0235 | 279 | MobiDBLite | consensus disorder prediction | 94 | 130 | - | - | |
| Lele54g0235 | 279 | SUPERFAMILY | Homeodomain-like | 118 | 185 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele54g0235 | Lele-ChrLele54 | 2001138 | 2002289 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele54g0235 | 1 | 279 | Homeobox Transcription Factor Family | AT4G37790 | 59.532 | 6.31e-95 | 279 |
Transcription factors information