Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0232 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCGCCGGAGGAAGACGCCAAACTCAAAGCTTACATCGAACAGCGCGGCACCGGCGGCAACTGGATCGCGCTCCCTCACAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGACTGAGATGGTTGAATTATCTTCGCCCCAACATCAAGCATGGTGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGCTAGTATTGGAAGCAGGTGGTCTATAATAGCGGCGCAATTACCAGGAAGAACCGACAATGATATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAACTTCTGGGGAAGCAGCGTAAGCAACAAGAAGCCCAAGCTCGCCGAGCTAACAACACGTTCAAGCAACAAGAACTTAAGATCAGACAGACGAATAATTTGGTGCTCATGAACCAAACTCCTAATTCTTTGTCTAGTACGCATCAGCCTTCGATCCAAGAACCCTACGATCTCAACAATCTAAGAAACATTTTAACTAAACTTGGTGGAAGAGTTTCCCCTGATCATCATCTCCCTCATCAATACCCATATGAATGTGACCCTTTCTTCTTCCCGCCACAAGACCAGCCATCATATCCAGTTCCAAACTCATCAGTGATAAACGATTGCAGTACTTCGAACGTATTTGAAGGATTTCAAATTGAAAACTTGCAGAGTAATGATTTGAGCCAGATGGGGTGTGTGAACACTACTACGCAGCAAGTGTATGGATTTCAGAGTTATAACAGTGGAGTAATGGAGTCGTCGTCGACGGCCACCACCACTTCAACGGAAAGTAGCAGTTGGGCAGACATGAGCTCTCTGCTAAATTACTCTCCTTACAACATGGTTTCCGAATACCAAGAAGTAATGTTGCCTCAAGATGTTGCTTTCGATGAGCCTGCAGCTGCCTACTTTGGATGCAATAACTTCTCTGAATTTTGTACTACATCAAACCCTAACGATTGA 1014 0.4536 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQRGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYASIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKQQEAQARRANNTFKQQELKIRQTNNLVLMNQTPNSLSSTHQPSIQEPYDLNNLRNILTKLGGRVSPDHHLPHQYPYECDPFFFPPQDQPSYPVPNSSVINDCSTSNVFEGFQIENLQSNDLSQMGCVNTTTQQVYGFQSYNSGVMESSSTATTTSTESSSWADMSSLLNYSPYNMVSEYQEVMLPQDVAFDEPAAAYFGCNNFSEFCTTSNPND 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0232 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele54g0232 337 CDD SANT 71 113 IPR001005 -
Lele54g0232 337 PANTHER OS09G0431300 PROTEIN 1 284 - -
Lele54g0232 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele54g0232 337 SMART sant 13 64 IPR001005 -
Lele54g0232 337 SMART sant 67 115 IPR001005 -
Lele54g0232 337 Gene3D - 70 145 - -
Lele54g0232 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele54g0232 337 CDD SANT 16 62 IPR001005 -
Lele54g0232 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele54g0232 337 FunFam Transcription factor RAX3 7 68 - -
Lele54g0232 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele54g0232 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele54g0232 337 Gene3D - 7 68 - -
Lele54g0232 337 FunFam Transcription factor MYB36 70 140 - -
Lele54g0232 337 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele54g0232 337 Coils Coil 115 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0232 Lele-ChrLele54 1959713 1960945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0232 1 291 MYB Transcription Factor Family AT3G49690 48.534 1.73e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0232 Myb_DNA-binding 1.9e-12 CL0123