Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0219 ATGCGGAAACCTTCCTGTTGGTTTCCTTTCCGGGTAATAGGACGCCAACCAGAACAATGTGGCTATCCTGGTTTTGATTTACAATGTTCTTCTGCAAATCAATCTGTTCTTGAGCTACCTGGATCAGTCAAGCTCAATGTCAAACGCATTGATTACAAATCCCAAACCATTCAGTTATATGATCCTTCTGGTTGCCTAATTTCTAGGCATGTCCGTAATCTCACTCTTCTTCCTTCTTCCCCTTTCCAGATCAAACACCAGAATCTCAATGACTTTACAATTTTCAATTGCTCGTCAGCAAGAGATGGAGAAATTATTTCAACGTGTCTCAGCACCTCTGCTTACCAAGTATATGCGGTTTTATCTTATCGTCAGATTGGACAACTTCCCCTGTTACTTTGCAGCAAAATATTCAACATTTCATCTGTCCCACCTGAGATTTTTTATGTTGAGAACACTCTTGATTTGATTTGGTCTAATCCAATGTGCAAACATTGTTCATCAGACAAATATGTAATTACAGGATCAATCATGGGCTCACTTCTAGTGGTTGGCTAA 558 0.3961 MRKPSCWFPFRVIGRQPEQCGYPGFDLQCSSANQSVLELPGSVKLNVKRIDYKSQTIQLYDPSGCLISRHVRNLTLLPSSPFQIKHQNLNDFTIFNCSSARDGEIISTCLSTSAYQVYAVLSYRQIGQLPLLLCSKIFNISSVPPEIFYVENTLDLIWSNPMCKHCSSDKYVITGSIMGSLLVVG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0219 185 Pfam Wall-associated receptor kinase galacturonan-binding 8 61 IPR025287 GO:0030247
Lele54g0219 185 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0219 Lele-ChrLele54 1836362 1839838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0219 8 166 C3H Transcription Factor Family AT2G25410 32.184 4.97e-16 73.2