Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0213 ATGTCCGTCTCCCCGAACCACCTAGTAACTCTTGACTTGTTCTGCAATGAAGCAGCAAGTGACGTGGTTTCTTCGGATTCCGATATTACTAACTGTGAATCATTGGCGGCTTCCAGGGTCTCATCATCATCATTGGATTCCGAAGATGAAAGCTGTTTCTTGACCTTATTGGACTCTGAACTTGATCAAATACACGAAAGACAACATTCACTTTCACTGCTTCACGAAAAACCATGGCTCAGAACTGCTCGAGAAGATGCCATAATGTGGATGCTAAAGGTTCAAGGTTACTACAGTTTTACCCCAGAAACGGCATGCCTATCTGTGAATTATCTTGATCGTTTCCTTTTGTCACACTCACTGCCGCAAGATGAAGCATGGCCGTTGCAGTTAGTTGCAGTGGCTTGTTTGTCTGTGGCAGCAAAAATGGAAGAAACAAGGATTCCACTTTTAGTAGACTTACAAATGATAGAGCCTAAGTTCTTGTTTAAGCCTAAAACAGTTCAAAGAATGGAGCTTTTGGTTATGGCGGCTCTCAGGTGGCGATTGCGTGCTGTTACTCCTTTTGATTTTGTTAATCTCTTCATTGCTAAGGCTAATAAGCTATCATGCTCTGCCTCCCATCACATTATTTCTCGCGTCTCAGATATTATAATCAGAACATGTTTAGTGATCGATTTCTTAGAGTATCCTCCATCTGCAATAGCTGCTGCTGCTCTGTTTTGGACAACCAATCAATATGTTGATGAACAGAATCTAAGCTTCTTCCACGAAAATATAAACAGAGAGATGGTGGAGAAATGTTACAACCTCATGAAGCAGAGGATTTTCAGATCAGAACATTTTGCAACAACGAATTCAGATTCATTGCCTCTAAGTCCTACTTGTGTGCTTGATCTTGCAGCTATGCAAGAAAACAGCAAGGATCAAAACCCTGACTTGACAAGGGTTTCCTCGAGAGAAGAAGGCAATGAAGCTGTCAACGGCTAG 990 0.4192 MSVSPNHLVTLDLFCNEAASDVVSSDSDITNCESLAASRVSSSSLDSEDESCFLTLLDSELDQIHERQHSLSLLHEKPWLRTAREDAIMWMLKVQGYYSFTPETACLSVNYLDRFLLSHSLPQDEAWPLQLVAVACLSVAAKMEETRIPLLVDLQMIEPKFLFKPKTVQRMELLVMAALRWRLRAVTPFDFVNLFIAKANKLSCSASHHIISRVSDIIIRTCLVIDFLEYPPSAIAAAALFWTTNQYVDEQNLSFFHENINREMVEKCYNLMKQRIFRSEHFATTNSDSLPLSPTCVLDLAAMQENSKDQNPDLTRVSSREEGNEAVNG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0213 329 MobiDBLite consensus disorder prediction 307 329 - -
Lele54g0213 329 SUPERFAMILY Cyclin-like 168 281 IPR036915 -
Lele54g0213 329 CDD CYCLIN 84 176 IPR013763 -
Lele54g0213 329 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Lele54g0213 329 FunFam D6-type cyclin 67 181 - -
Lele54g0213 329 Pfam Cyclin, C-terminal domain 186 276 IPR004367 -
Lele54g0213 329 SMART Cyclin_C_2 186 295 IPR004367 -
Lele54g0213 329 Gene3D - 185 268 - -
Lele54g0213 329 SMART cyclin_7 89 177 IPR013763 -
Lele54g0213 329 PANTHER CYCLINS 51 277 IPR039361 -
Lele54g0213 329 SUPERFAMILY Cyclin-like 51 183 IPR036915 -
Lele54g0213 329 Pfam Cyclin, N-terminal domain 75 183 IPR006671 -
Lele54g0213 329 FunFam D6-type cyclin 182 270 - -
Lele54g0213 329 Gene3D - 78 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0213 Lele-ChrLele54 1800386 1801798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0213 1 273 Core Cell Cycle Gene Families AT1G70210 41.071 1.54e-59 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0213 54 1800386 1801798 Lele55g1278 55 19277344 19278661 hybridization
Lele54g0213 54 1800386 1801798 Lele56g1225 56 15630504 15639887 hybridization