Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0205 ATGGAAGAGAGAAAGAGGACGAGGAACAAACACAGGAAGCCAACAAATTTATGTTGCAATGCAGGGAGCAGATTTTCTGCATCTGCTGTGGTGTGGAGCTTGGTAGGATGCATTATTTTGATTCATTTCTATTCCAATATTCATCAAAGAGATAGGGAAGGTGGAGAGGTCCGATTGAGAGTAAGCCGTCATCCCCAACTCCGTGAGCTTCAACAGGTGGAGGAGGAGGAGAACATCCGAATTCCCCCTCCAAAGGGAAAGAGGTCCCCTAGGGCAGCTAAACGTAGACCTAAGCGCACAACCACAGTGATTGATGAATTCCTTGATGAAAATTCACAACTGAGACACCTATTTTTTCCTGGTCACAAAAGAGCTTTAGATACAGCAAATGCTGGTAATGAAAGTTATCATTACTACCCCGGCAGAATCTGGTTGGATACAGATGGAAATCCTATTCAAGCCCATGGAGGTGGCATTCTGTATGATAAAAAATCGAGGACATACTACTGGTATGGTGAATATAAAGATGGGCCCACTTACCGTGCTCACAAGAAAGGAGCTGCTCGTGTGGACGTTATAGGAGTTGGTTGTTATACTTCCCAGGATTTGTGGACTTGGAAAAATGAGGGAATTGTATTGGCGGCAGTGGAAACAAATGAAACTCATGATCTGCACAAGTCCAATGTGCTTGAGAGGCCAAAAGTGATTTACAATGACAAAACTGGAAAATATGTGATGTGGATGCACATAGACGATGCCAATTATACAAAAGCTGCCGTTGGGGTAGCAATCAGTGATACTCCTGATGGTCCTTTTGATTATCTTGGTAGCCAAAGGCCACATGGATATGAAAGCAGGGATATGACAGTTTTCAAGGATGATGACGGTGTGGCATATCTAATATACTCTTCCGAGGAAAATAGTGTACTGCACATTGGACCCTTAACTGAAGATTATCTTAATGTGACTTCTGTCATGAGAAGGATCCTAGTGGGACAGCACAGAGAAGCGCCTGCTCTATTCAAGCACCAAGGCACATACTATATGATCACATCCGGCTGCACCGGATGGGCCCCAAATGAGGCACTGGCTCATGCATCTGATTCAATATTGGGGCCATGGGAAACAATGGGAAATCCATGCGTCGGAGGGAACAAAGTGTTTCGACTGACAACTTTCTTTGCTCAGAGCACTTTTGTGCTCCCTATACCTGGATTACCTAGTTCATTTATTTTTATGGCAGATCGGTGGAATCCCGCAGACCTAAGGGACTCAAGATATGTATGGTTACCTTTGATAGTGGCAGGACCTGCTGATCAACCTCTGGAGTACAATTTTGAGTTCCCATTATGGTCAAGAGTTTCTGTCTTTTGGCACAGAAAATGGAGACTGCCTCTGGGATGGTGGCGGGGATTCATATAA 1422 0.4444 MEERKRTRNKHRKPTNLCCNAGSRFSASAVVWSLVGCIILIHFYSNIHQRDREGGEVRLRVSRHPQLRELQQVEEEENIRIPPPKGKRSPRAAKRRPKRTTTVIDEFLDENSQLRHLFFPGHKRALDTANAGNESYHYYPGRIWLDTDGNPIQAHGGGILYDKKSRTYYWYGEYKDGPTYRAHKKGAARVDVIGVGCYTSQDLWTWKNEGIVLAAVETNETHDLHKSNVLERPKVIYNDKTGKYVMWMHIDDANYTKAAVGVAISDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYLIYSSEENSVLHIGPLTEDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHASDSILGPWETMGNPCVGGNKVFRLTTFFAQSTFVLPIPGLPSSFIFMADRWNPADLRDSRYVWLPLIVAGPADQPLEYNFEFPLWSRVSVFWHRKWRLPLGWWRGFI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0205 473 CDD GH43_CtGH43-like 152 432 - -
Lele54g0205 473 Gene3D Glycosyl hydrolase domain; family 43 121 448 IPR023296 -
Lele54g0205 473 SUPERFAMILY Arabinanase/levansucrase/invertase 151 434 IPR023296 -
Lele54g0205 473 MobiDBLite consensus disorder prediction 74 99 - -
Lele54g0205 473 PANTHER GLYCOSYL HYDROLASE 43 FAMILY MEMBER 29 465 - -
Lele54g0205 473 Pfam Glycosyl hydrolases family 43 193 377 IPR006710 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0205 Lele-ChrLele54 1761476 1764115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0205 15 465 Glycoside Hydrolase AT5G67540 70.563 0.0 689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0361 49 2126847 2133024 Lele54g0205 54 1761476 1764115 CCT
Lele54g0205 54 1761476 1764115 Lele55g1284 55 19316672 19325392 hybridization
Lele54g0205 54 1761476 1764115 Lele56g1233 56 15677374 15680267 hybridization