Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0204 ATGGATACCTTGTTTCGGCTTGTCAGTTTTCAGTCTCAACCTTCTGATCCTCATTCCCTCAACAATTCCTCTAGCAGCTCTAGATCCTCCAGACAAAACAACAAGAAGAAGAATTACAATTACAGCCACGACCACCACCATCACTACCACCACCAGCAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTGTCCTCTTCTTCTTCTAAGCACTACTATCCTTATCATCATCATCCCCACCCGTCTTCTTCCACCACCACAACCGCCACCCCCACCACTGCTACTACTTTCACTACCACCACTCCCACCACTTCTGATTTCTCCTTCTCTCTCTCCCCCACCACTCCTGACCTTCACAACTTTGAATTCTCCGGCCGATGGGCTCACGATCTCCTCCTTGAGACCGCCCGTGCCGTTGCCGAAAAGAACAGCGCTCGTGTCCAGCAGTTGATTTGGATGCTCAACGAACTTGCTAGTCCCTATGGTGATACGGATCAGAAGCTCGCAGCTTACTTCCTTCAGGCTCTGTTTAGTCGGGTTACTGACTCCGGGGACCGGACCTACCGTACTTTGGCCACCGCGTCGGAGAAAACATGCTCCTTTGAGTCGACCAGGAAGATGGTTTTGAAGTTCCAAGAGGTCAGCCCTTGGACTACTTTCGGTCACGTCGCTTCCAATGGCGCCATCTTGGAAGCCTTGGAAGGTGAGCCGAAGTTGCACATAGTTGATATTAGCGATACACATTGCACCCAGTGGCCCACTCTTCTTGAAGCCTTGGCCACTCGCAGCGATGACACCCCTCACCTCCGGTTAACCACGGTGGTTAGCCGCCGAGCCGGTGGCTCCATCGCGGCGGTTCAGAAAGTCATGAAGGAGATAGGGACTAGAATGGAGAAATTCGCTCGGCTCATGGGTGTTCCCTTTAAATTCAACGTCATTCATCACGCGGGTGATCTCTCAGACTTTAATTTCTCTGAATTAGATATTAAAGACGACGAGGCTCTCGCCATTAACTGTGTGAACACGTTGCATTCCATCACGGCCTTTGGTAATAACCGTGACATGTTGATATCCTCGTTTCGGAGATTACAACCTAGGATAGTCACAGTGGTGGAAGAGGAAGCAGATCTTGATGTTGGATTTCATGGGTTTGAATTTGTACGAGGTTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTCGAGGCACTGGAGGAGAGCTTCCCCCGAGCAAGCAACGAGCGTTTGATGCTCGAGAGAGCGGCAGGACGAGCCATCGTTGACTTGGTGGCTTGTGATCCGTCGCAGTCGTTAGAACGGAGGGAGACGGCGGTGAGATGGTCGCAGCGGCTGCATGGTAGTGGGTTCAACTCAGTGCCGTTCAGCGATGAGGTATCCGACGACGTGAGAGCGCTGTTGAGGAGGTACAAGGAAGGTTGGTCAATAACACATTGCTCCGACGCCGGAATATTCTTGTCGTGGAAGGAACAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1536 0.5124 MDTLFRLVSFQSQPSDPHSLNNSSSSSRSSRQNNKKKNYNYSHDHHHHYHHQQEDEECFNFFMDEEDLSSSSSKHYYPYHHHPHPSSSTTTTATPTTATTFTTTTPTTSDFSFSLSPTTPDLHNFEFSGRWAHDLLLETARAVAEKNSARVQQLIWMLNELASPYGDTDQKLAAYFLQALFSRVTDSGDRTYRTLATASEKTCSFESTRKMVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISDTHCTQWPTLLEALATRSDDTPHLRLTTVVSRRAGGSIAAVQKVMKEIGTRMEKFARLMGVPFKFNVIHHAGDLSDFNFSELDIKDDEALAINCVNTLHSITAFGNNRDMLISSFRRLQPRIVTVVEEEADLDVGFHGFEFVRGFQECLRWFRVYFEALEESFPRASNERLMLERAAGRAIVDLVACDPSQSLERRETAVRWSQRLHGSGFNSVPFSDEVSDDVRALLRRYKEGWSITHCSDAGIFLSWKEQPVVWASAWRP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0204 511 MobiDBLite consensus disorder prediction 8 36 - -
Lele54g0204 511 ProSiteProfiles GRAS family profile. 123 510 IPR005202 -
Lele54g0204 511 MobiDBLite consensus disorder prediction 8 50 - -
Lele54g0204 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 500 IPR005202 -
Lele54g0204 511 MobiDBLite consensus disorder prediction 74 96 - -
Lele54g0204 511 Pfam GRAS domain family 134 510 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0204 Lele-ChrLele54 1756688 1758223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0204 1 511 GRAS Transcription Factor Family AT4G37650 63.128 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele54g0204 GRAS 7.1e-108 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0375 51 2155181 2158460 Lele54g0204 54 1756688 1758223 CCT
Lele52g0390 52 2282890 2288594 Lele54g0204 54 1756688 1758223 CCT
Lele54g0204 54 1756688 1758223 Lele55g1285 55 19329123 19330844 hybridization
Lele54g0204 54 1756688 1758223 Lele56g1234 56 15683665 15685179 hybridization