Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0197 ATGGCCGTGAGGCCCTTCCATTTCACCTTCTCGCCTGATAGAATCTTCTCTCTTCTGCGCGCTCCTCCGTTTTCTTTTTCCTCTGGTTATCATTCTTGTCCTGCTTTTTCCTCCCCGTGGCGTTATAAACTTCCGTTGTCCTCTCGATTGTTTTTCCTTATTTCTGTGTTCCGTCACTTCACGGCGTTGGCTGCAACTCCGTTCTCACGCGCTAGACAGTGCTATCCGCCACCGCAACCACACGACGACCGCCTGCGGTCGTTGTCTCCATCCGACACTCTGGCGCAGAAGATTGGAAAATCCATTCGCCGACCGGGCGCTGCCTCGAAGGCGAGGGTTTATGCCGATGTTAACGTTGTCCGTCCTAAGGAATATTGGGACTATGAGTCGCTTACCGTCCAGTGGGGGGAGCAAGATGATTATGAGGTTTCGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTGTTTGAGGGCGTTCACAGCACGGATAATGAAAAGTGCATCATTAAGATTCTGAAGCCAGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGCGGAGGGCCCAATATCGTAAAGTTGCTTGACATTGTTAGAGATCAGCAGTCAAAGACTCCAAGCCTTATTTTTGAATATGTTAACAACACTGATTTTAAAGTGCTCTATCCTACACTGTCAGACTATGACATACGATATTACATTTATGAGATTTTAAAGGCCCTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAACCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTACCATCCTGGTAAAGAATATAATGTTCGAGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCCGGCATGATTTTTCGTAAAGAGCCATTCTTTTATGGACATGATAATTATGATCAACTCGTCAAAATTGCAAAAGTACTTGGGACAGATGAATTGTATGCATATTTGAACAAGTACCGGATAGAGTTGGACCCGAATCTTGCAGCACTTGTTGGAAGGCATAGTCGGAAGCCATGGATAAAGTTCATTAACGTCGATAATCAACATTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTGCGATATGATCACCAAGAACGACCCACCGCAAAAGAAGCCATGAGTCATCCTTACTTCAATCCTGTTAGAAATGCAGAAAGCAGTCGATCTCGTGTTATTTCTGCTTGA 1329 0.4417 MAVRPFHFTFSPDRIFSLLRAPPFSFSSGYHSCPAFSSPWRYKLPLSSRLFFLISVFRHFTALAATPFSRARQCYPPPQPHDDRLRSLSPSDTLAQKIGKSIRRPGAASKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVSRKVGRGKYSEVFEGVHSTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYEILKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELYAYLNKYRIELDPNLAALVGRHSRKPWIKFINVDNQHLAVPEAIDFVDKLLRYDHQERPTAKEAMSHPYFNPVRNAESSRSRVISA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0197 442 SUPERFAMILY Protein kinase-like (PK-like) 114 430 IPR011009 -
Lele54g0197 442 FunFam Casein kinase II subunit alpha 127 217 - -
Lele54g0197 442 Gene3D Transferase(Phosphotransferase) domain 1 218 426 - -
Lele54g0197 442 Gene3D Phosphorylase Kinase; domain 1 141 217 - -
Lele54g0197 442 SMART serkin_6 141 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0197 442 ProSiteProfiles Protein kinase domain profile. 141 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0197 442 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Lele54g0197 442 PANTHER CASEIN KINASE II SUBUNIT ALPHA 105 435 IPR045216 GO:0004674|GO:0006468
Lele54g0197 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Lele54g0197 442 CDD STKc_CK2_alpha 122 426 IPR045216 GO:0004674|GO:0006468
Lele54g0197 442 FunFam Casein kinase II subunit alpha 218 429 - -
Lele54g0197 442 Pfam Protein kinase domain 141 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0197 Lele-ChrLele54 1712535 1719047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0197 139 427 Core Cell Cycle Gene Families AT1G76540 30.255 1.01e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele54g0197 Pkinase 2.3e-66 CL0016