Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0188 ATGGAACAGTTGCTTATTCACTGTGCCGACGCCATTGAAGCTAATGACGTCACTCTCGCCCAACAGATCCTATGGGTTCTCAACAACATTGCACCTCCCGACTGCGACTCCAATCAGCGTCTTGCCGCCACTTTCCTACGTGCCCTCACCGCACGCGCCGCCAAATATGGAAGCTCCAAAATGTTAGCCGCCGTCGCAAGCGCACCCAACACCATCTGCAGTCTCGCCATACAAACCCACCGGTTCTCCGTTATCGAGCTCGCCAACTTCATCGACAACAACCCCTGGCATCGGTTCGGCTTCATCGCAGCTAATTCTGCCATTCTAGAAGCCACGGAAGGTTTCTCCACCATCCACATCGTTGACCTAAGCTCAACACACTGCATGCAGATTCCCACCCTAATCGACGCCATCGCTTCCCGCCACGACGGCCCTCCTCTGATCAAGCTCACAGTAGTCGGTGCTTCTAGGAACATCCCACCCATGCTTGACCTTTCCTACGACGAACTCGGTTCAAAGCTGGTGAATTTCGCAAAGTCTAAAAACGTCATGATGGATTTCAGAGTGATTTCAACTCACGCAGACGGGTTCGCTGCTCTGATCCAATACCTTGGGTTGCACCACCGTCTCATGACGGAAGCTTTGGTGATAAACTGTCACATGATGCTTCATTGTATTCCAGATGAAACCCTATCTGCAGCTACTTCTCCTTCTCCTCCATCACTGAGATCACAGTTTCTCAAGGCTCTGCGGAGTTTGAACCCAGCGCTTGTCGTTTTGGTGGAGGAGGACGCCAATTGGACATGGAGTGATTTGGTTTGCAGGCTGAGAGCTGCGTTTAACTTTATGTGGATACCGTACGACACCGTGGACACGTTTGTTCACCGAGGAAGCACGCAAAGGCAGTGGTACGAAGCGGATATGTGTTGGAAGATAGAGAATGTGATAGCGCATGAAGGTGTTGAGAGGGTAGAGAGACTTGAGGGTAAGAGCAGGTGGTGGCAGCGAATGAGAGATGCTGAGTTTCAGGGGATTAGCTTCAGCGATGACGCCGTTTCGGAGGTGCAGGCCATGCTGGACGAACATGCAGCCGCGTGGGGATTCAAGAAGGAAGACCAACATCTTCTGCTTACGTGGAAAGGACATAATGTCATTTTTGCCTCTGCTTGGTTTCCTGCTTGA 1182 0.5161 MEQLLIHCADAIEANDVTLAQQILWVLNNIAPPDCDSNQRLAATFLRALTARAAKYGSSKMLAAVASAPNTICSLAIQTHRFSVIELANFIDNNPWHRFGFIAANSAILEATEGFSTIHIVDLSSTHCMQIPTLIDAIASRHDGPPLIKLTVVGASRNIPPMLDLSYDELGSKLVNFAKSKNVMMDFRVISTHADGFAALIQYLGLHHRLMTEALVINCHMMLHCIPDETLSAATSPSPPSLRSQFLKALRSLNPALVVLVEEDANWTWSDLVCRLRAAFNFMWIPYDTVDTFVHRGSTQRQWYEADMCWKIENVIAHEGVERVERLEGKSRWWQRMRDAEFQGISFSDDAVSEVQAMLDEHAAAWGFKKEDQHLLLTWKGHNVIFASAWFPA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0188 393 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 381 IPR005202 -
Lele54g0188 393 ProSiteProfiles GRAS family profile. 1 391 IPR005202 -
Lele54g0188 393 Pfam GRAS domain family 1 390 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0188 Lele-ChrLele54 1603034 1604215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0188 1 392 GRAS Transcription Factor Family AT3G49950 58.586 1.52e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele54g0188 GRAS 5.5e-90 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0188 54 1603034 1604215 Lele55g1300 55 19461140 19462480 hybridization
Lele54g0188 54 1603034 1604215 Lele56g1248 56 15819447 15820790 hybridization