Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0183 ATGTCGAAGGCGCGTGTTTACGCGGACGTCAATGTTCAACGGCCTAAAGAATACTGGGATTACGAGGCGCTCACCAGTGGGATTGGAAGTTTTGCTATTTTCAGTTCTCAATTGAGGCTGTGTCCTTTTGATTGGATCTCTCGCTCTTATCAAGATGATTATGAGGTTGTGCGAAAAGTAGGAAGGGGAAAATATAGTGAAGTTTTTGAGGGTATAAACGTTAATAGCAATGAGCGCTGCGTAATCAAGATTCTCAAGCCTGTAAAGAAAAAGAAGATCAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATCGTTAGAGATCAACACTCAAAAACTCCAAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTACTCAAGGCATTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTGAAGCCTCATAATGTTATGATAGATCATGAGTTGCGAAAACTTCGCTTGATTGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTAGCATCAAGATACTTTAAGGGGCCTGAGCTACTAGTTGATTTGCAAGACTACGACTACTCATTAGATATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAGGAGCCATTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATCGCTAAGGTGATTGGGACCGATGAATTAAATGCATATCTGAATAAGTATCATCTGCAGCTTGATCCTCAACTTGATGCACTTGTGGGAAGACATAATCGCAAGCCTTGGTCTAAATTTATTAATGCGGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCATCAGGACAGGCTCACTGCAAAAGAAGCAATGGCTCACCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGCAGTAGAATGAGAACGTAG 1059 0.4013 MSKARVYADVNVQRPKEYWDYEALTSGIGSFAIFSSQLRLCPFDWISRSYQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVIGTDELNAYLNKYHLQLDPQLDALVGRHNRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0183 352 Gene3D Phosphorylase Kinase; domain 1 54 130 - -
Lele54g0183 352 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 348 IPR045216 GO:0004674|GO:0006468
Lele54g0183 352 FunFam Casein kinase II subunit alpha 131 342 - -
Lele54g0183 352 CDD STKc_CK2_alpha 15 339 IPR045216 GO:0004674|GO:0006468
Lele54g0183 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lele54g0183 352 ProSiteProfiles Protein kinase domain profile. 54 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0183 352 FunFam Casein kinase II subunit alpha 43 130 - -
Lele54g0183 352 Gene3D Transferase(Phosphotransferase) domain 1 131 339 - -
Lele54g0183 352 Pfam Protein kinase domain 54 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0183 352 SUPERFAMILY Protein kinase-like (PK-like) 40 343 IPR011009 -
Lele54g0183 352 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Lele54g0183 352 SMART serkin_6 54 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0183 Lele-ChrLele54 1563643 1568567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0183 46 339 Core Cell Cycle Gene Families AT1G76540 29.524 2.19e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele54g0183 Pkinase 5.3e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0358 50 2049178 2054970 Lele54g0183 54 1563643 1568567 CCT
Lele51g0352 51 2009824 2012909 Lele54g0183 54 1563643 1568567 CCT
Lele52g0363 52 2126312 2134617 Lele54g0183 54 1563643 1568567 CCT
Lele54g0183 54 1563643 1568567 Lele55g1304 55 19489352 19495129 hybridization
Lele54g0183 54 1563643 1568567 Lele56g1253 56 15852715 15857683 hybridization