Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0173 ATGGGAGACAATGTTGTGCCACCCAGTGCCTTGTTGGATTCAGCCATAGATTTTGATGACATGGAAGAACTTTTCTCAGATGGATGCTGGTTGGAAACCGCTGCAGATGGATCTAATTTTTTGCTGGGAGGCCCTTCTGCGTCCAATCCCCTCCTTGACTCATCATTTTCGTGGCCTGCCTTGGATACTAATGGGCATGTGAGCCTAGAACAAACGCAGAGTCCATTGATTGACGACTACAACGAAACACAAACCAATACTCGATCGGATGGCAAGGGCAAGGACATAATAGATGTTGGTGGGACTTGTAATCCGTCTGAAATTCGTTCAGTTGAAAGCTCAGAAGTCGTTAGGAGGTGGAGGATTGGACCTATGGCTAATCCGAGCCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACAAAAACATGCTTTTACAAATATGGGTGCCGTTTAATAGAGAGGGTGGGAGGATTCTAAGCACTTGTGATCTTCCCTTCTCGCTTGAAAGCAGCAGTCCAAATCTTTCTAAATATAGAGAAATATCTGCCAAATATCATTTTTCAGCTGAGGGGCATTCTAGTGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAGGAGAAGGTCCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAGTGATGAGTACCCACGAGTTGACCATGCTCACGTGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAATGTAGCAACATTTGCTTGGGTGTTATTGAGGTTGTAATGACAGCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGAGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATTTCAAGTATACAGAAGGTGAAGCAGGCATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTTTTGAGATCAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGATAATTATCTACACTGTGTATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGCGTCACTGGTGAAGCTTTTACGACCAATCAGCCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGTTTATCCACTGTCTCATCATGCAAGGATTTTTGGGCTGCGAGCTGCTGTTGCTATACGCCTAAGAAGCATCCATAACAGTACAGATGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACTGACAATGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAGGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAGGAAACCAACTTATCAATTGATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTATGATGGAGTTCCAACAATGCGGGAAGGTTGCTTCACAGGGCACCAAAGAAAAGTCAAATGAAACTTTGACTAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTAACTATGGTTGGGAGTGTTCTTTTGGTGAGGGTGGCTTACCAATTGCAGGTTCAAGTAAAACGGGAGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCGTCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCTTGCAAATCCATCAAGCACAAGGCCGGATACTAGCTTGCTAAGACCAGCAGCGCCTTCATCTTCATGCAATCAAAGTTCCAGTTCGAGCCATTCCTCTTCTAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCCGGTGGTATAGTTACTAGGTTTAGAGAAGATTCTGCTGATGGGGTCATGAAGAGGATTCCAAGTGAAGTAGGGATAAAAAACTTATGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAGCACCTTGTGAACATCCAAAAACTGAGTTGAAAAGCAGTCATAAAGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAGTTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAACATAGATGACATGTGCAAATACGATATCAAGTATCTGGACGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTGGAGGAGTGCATTGAAGTTTGTCAACATTCTCAGAGCAATATCATGGCCATCTGCGGTTTAGCTCCTTCCTCCGTTACCACTGGAGAGGCCTGGTTGGGGAAGCATCTCCTGCAGTACAATGGAGACACCAAGCACCCTCTGATCCTCCGATTCGGGGTTATTTTCATTTCTGACTCCTCCAACTTAGCTTCTCTCCATTTGCAATGCTCATACTCAGATTTGGCTTCTCTCTATTTGTGA 2799 0.4348 MGDNVVPPSALLDSAIDFDDMEELFSDGCWLETAADGSNFLLGGPSASNPLLDSSFSWPALDTNGHVSLEQTQSPLIDDYNETQTNTRSDGKGKDIIDVGGTCNPSEIRSVESSEVVRRWRIGPMANPSPECSVLERLIKALVYIRDFNRDKNMLLQIWVPFNREGGRILSTCDLPFSLESSSPNLSKYREISAKYHFSAEGHSSGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAHVYDVRGSLALPVFEKCSNICLGVIEVVMTAQKIKYFPELESVCKALQAVDLRSKNISSIQKVKQACNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHTDDNYLHCVSPVEHACYVGDPCVQAFHEACSEHHLLKGQGVTGEAFTTNQPCFSTDVTSFSKIVYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDNEEQKKMLTSLSMIIQRVCHSLRVITNKELEEETNLSIDEVTVPAESRSAMMEFQQCGKVASQGTKEKSNETLTRQVSNLSQQEDSILKGNLNYGWECSFGEGGLPIAGSSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDLANPSSTRPDTSLLRPAAPSSSCNQSSSSSHSSSNMSELQLHAQNVAGGIVTRFREDSADGVMKRIPSEVGIKNLCQDTAELLPTSQSQEAPCEHPKTELKSSHKAHKKEDTHRVKVTFREEKTRFRMPKSWRYEDLLWEIAWRFNIDDMCKYDIKYLDDDSDWVLLTCDADLEECIEVCQHSQSNIMAICGLAPSSVTTGEAWLGKHLLQYNGDTKHPLILRFGVIFISDSSNLASLHLQCSYSDLASLYL 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0173 932 MobiDBLite consensus disorder prediction 766 787 - -
Lele54g0173 932 Pfam RWP-RK domain 581 629 IPR003035 -
Lele54g0173 932 Pfam PB1 domain 792 867 IPR000270 GO:0005515
Lele54g0173 932 ProSiteProfiles PB1 domain profile. 792 870 IPR000270 GO:0005515
Lele54g0173 932 MobiDBLite consensus disorder prediction 673 717 - -
Lele54g0173 932 Gene3D - 788 873 - -
Lele54g0173 932 ProSiteProfiles RWP-RK domain profile. 568 649 IPR003035 -
Lele54g0173 932 PANTHER PROTEIN NLP8 102 869 IPR045012 GO:0003700
Lele54g0173 932 SMART PB1_new 792 876 IPR000270 GO:0005515
Lele54g0173 932 CDD PB1_NLP 793 871 IPR034891 -
Lele54g0173 932 SUPERFAMILY CAD & PB1 domains 783 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0173 Lele-ChrLele54 1481050 1485045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0173 15 870 NLP Transcription Factor Family AT1G20640 48.789 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele54g0173 PB1 3.4e-19 CL0072