Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0164 ATGACTTTCTGCAAGGAGGAAGAAGAAGAAGTGGTGGATAAGATATCAGTTTCAGTATCAGTATCAATGAACAAAGAAGAAGAAGAAGTTGGAGAATGGTTGAGTTTAGGACTCAAAGGATCTGAAAAACCTCAGAACATGGAGGATTCTGAAATATCAAAATCATTGCAGAATAATAATAAGGTGTTCTCATGCAATTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTGGGGGGGCACCAGAATGCACACAAGAGGGAAAGAGGAGAAGCAAGAAGGAACCAATCTCATAGAATGATGATGTTGGCGTCAAGGTCACTGGTTGTGCAGCCACACTCGCTTGTGTACAAGCCAAACAGAGAAGGCTCAGGCATGGAGGCTCGATTCCATGGTTTCAATCATGGATTTCAAAAGGCATATTGGACGCCATTTCTGGTAGAAAAAGCTATGGAATTGAGTTGGCCTGGAAGTTTTCGCGTGGATTTGCCAAAACAAGAATCAGATGTAAATAAGCTTGACTTAGATCTCCGGCTCTGA 540 0.4185 MTFCKEEEEEVVDKISVSVSVSMNKEEEEVGEWLSLGLKGSEKPQNMEDSEISKSLQNNNKVFSCNFCMRKFYSSQALGGHQNAHKRERGEARRNQSHRMMMLASRSLVVQPHSLVYKPNREGSGMEARFHGFNHGFQKAYWTPFLVEKAMELSWPGSFRVDLPKQESDVNKLDLDLRL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0164 179 PANTHER ZINC FINGER PROTEIN 4-LIKE 14 179 - -
Lele54g0164 179 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
Lele54g0164 179 Gene3D Classic Zinc Finger 42 114 - -
Lele54g0164 179 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lele54g0164 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0164 Lele-ChrLele54 1397918 1398457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0164 34 170 C2H2 Transcription Factor Family AT1G24625 37.500 1.11e-20 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0164 54 1397918 1398457 Lele55g1321 55 19658215 19659817 hybridization