Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0153 ATGAAGAAATTTGTGTATACTCAACGAGATCAAAGTAAACTTTACCCCCTGAAAGAGCACGGAAATACCTCGATCAAGGATAATCATAAGGTAGGGAACAGGCGTGCTGGAAGGTATCTATCTATCTGGCCTCGGCCTCGGAACTTTGAAGATCTTACAATGGAGGAGAAGATAGACATTGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGGTACAAAAAAGAGGAATGCAGGGTGCGCTGGGAGACTGGAAAAACTTCTTAATCAGTCATGATAAAAAGTTCGGGTCTAATTTGAGTGATCCAGCAAAGAGGTCCCATGAGACACTGGTTTTATTTCTAAAGACGTTTACAAAGCAGGATGATTTAAAGTTTATTGATACCATCTTGCGACGCCATTCTAATCAAGACCTATTTGAGCTACTCAATGATAAGTCTCATGACATCCCTGAGCAGAGGCTTGTCCAAAAAACTTTGCAGCACCCATGGTATCCATTGGATTATACATTTGGAGAACTTGATGAGGACTGGGTGGTTATAAACCTTAAGAAAAAAAACAGGTTGCTGAAATTTACCAAGATGGTTGCCATTGATTGTGAAATGGTACTCTGTGAGGATGGGACTGAAGCAGTAGTGAGTATCTGTGTGGTTGACCGTGATTTGAAGGTTAAACTAAAAAAACTTGTACAACCAAACAAAGCAATTGCTGACTACAGGTCAGATATTACTGGTGTCTATCCTCAGGATCTTGAAGGAGTTACTTGCTCATTGGCTCACATACAGAAATCCTTGCATAAGATGTTAATGGATGGAACAATACTAGTGGGACATAGTTTGCATAATGATCTGCGTGCGCTGAAGCTAGATTATGTTAGAGTGATTGACACTTCGTATATCTTCCAATACTCAGATGGCAATATTCGCAGGAGACCTTCTTTGAATGCTTTATGTAAGGCCGTGTTAGGTTATGAACTTCGGCAAACAGGTTCTCCACATAATTGTCTTGATGATGCAATGGCGGCAGTGAAACTTGTTCTTGCTAAGATAGAGCGTGGTGTCGATAATGCAATTCCCTTGGCTCAAGAGCCTGTTCTTGAAAGCGAAATGGCTAAGCTTCTTCTTCACAGGATATCATCTGGGGTTAATAGTGAAGAACTGTATAGAGTTGTTCCTGGAGATTTCAATTTAGAACTGAGGCCGCCTAAAGGGGGAAAATATTCTGCCTTTGCCATCTTCATGAATCCACAAGAGGCCCATGAGGCTTTTGAAAGTCTCAAAGGCGACCAAGAAAAGGATTCAGCTGGACGTCCACAGAAGCTTGTCAAATTCCAGCTCAGTACAGGTGTGAAGACCATTATATGTGTTCGGAAAATGTCACCTGATAGCGACAATTACTCTAAGAGAGATTTAGAAGCGGACGAAACAACGGCGTCGAAGAAAGCAAAGATGGATCGTGAAATTGAAGGGAATGCCGCGGCCATCACTACCAAGTGTGACTCCCACTTGAATGAGATTGAAGCACTAAATCAACGGCTGAAAGAAAATGATTCGGAGATTGAATCGCTGAAGCAACAGTTGAAACAAAAGGATTACGAAATTTCCATATTGAATAAAATGGTATCCTCCTTGAACAAGAAATTAAAGAAATGA 1653 0.4096 MKKFVYTQRDQSKLYPLKEHGNTSIKDNHKVGNRRAGRYLSIWPRPRNFEDLTMEEKIDIADKKVLVDIVKLVQKRGMQGALGDWKNFLISHDKKFGSNLSDPAKRSHETLVLFLKTFTKQDDLKFIDTILRRHSNQDLFELLNDKSHDIPEQRLVQKTLQHPWYPLDYTFGELDEDWVVINLKKKNRLLKFTKMVAIDCEMVLCEDGTEAVVSICVVDRDLKVKLKKLVQPNKAIADYRSDITGVYPQDLEGVTCSLAHIQKSLHKMLMDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYSDGNIRRRPSLNALCKAVLGYELRQTGSPHNCLDDAMAAVKLVLAKIERGVDNAIPLAQEPVLESEMAKLLLHRISSGVNSEELYRVVPGDFNLELRPPKGGKYSAFAIFMNPQEAHEAFESLKGDQEKDSAGRPQKLVKFQLSTGVKTIICVRKMSPDSDNYSKRDLEADETTASKKAKMDREIEGNAAAITTKCDSHLNEIEALNQRLKENDSEIESLKQQLKQKDYEISILNKMVSSLNKKLKK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0153 550 SUPERFAMILY Ribonuclease H-like 195 350 IPR012337 -
Lele54g0153 550 Pfam Exonuclease 196 345 IPR013520 -
Lele54g0153 550 FunFam Small RNA degrading nuclease 3 190 364 - -
Lele54g0153 550 SMART exoiiiendus 194 355 IPR013520 -
Lele54g0153 550 Coils Coil 549 550 - -
Lele54g0153 550 CDD REX1_like 196 347 IPR034922 -
Lele54g0153 550 MobiDBLite consensus disorder prediction 464 484 - -
Lele54g0153 550 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 63 364 - -
Lele54g0153 550 Gene3D - 191 360 IPR036397 GO:0003676
Lele54g0153 550 Coils Coil 492 540 - -
Lele54g0153 550 Gene3D - 459 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0153 Lele-ChrLele54 1293756 1301984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0153 194 345 C2H2 Transcription Factor Family AT2G48100 35.366 6.33e-14 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0153 54 1293756 1301984 Lele55g1331 55 19791479 19799675 hybridization