Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0132 ATGTCTTGGGTTCGAGGAAACTTCATTGGAAGAGGAAGCTTCTCCACAGTGCACTTAGCAGTACCCACCAACAGTACCGCCTCTGAGATTATTTCTGCTCCTACCGCCGTCAAATCGTCGGAGGTTTTCTGCTGTTCTTTTCTCAAGAACGAGAAGGAGGTTTTGGATTGTCTTGGATTTTGTCCGCAAATTATACAGTGTTATGGGGATGGGTATAGCTTTGATAATGGTGGGGAATATTATAATTTGTTTTTGGAATATGCCGCCTGTGGTAGCCTTGCGGACCACATCAAGAATCGGAGTGGTCGGTTGCCGGAGTCTGATGTCCGGAGGTACACGATGTCGATTGTGAAAGGAATTCAGCACATACACGCGAGAGGTTTTGTTCACTGTGACATCAAGCTTCAGAACATTCTTCTGTTCGACAATGGAGATATCAAAATTGCAGACTTCGGCCTCGCGAAGAGAACAGGGGAGAAGGAAGAACAGAGTAAGGGAGAGAAGCAGCGCGAATGGAGGGGGACTCCCCTGTTTATGTCACCGGAATCGGTGAAAGACAACGTGTATGACTCTCCGGCGGATATATGGTCTCTCGGCTGTGCTGTGGTGGAGATGGTGACCGGAAAACCCGCCTGGAATAGCCCGAAAGGATCGGAATTGAATAGTATCTATTCGTTGTTGCTTCGAATTGGGGTTGGAGAAGAACTGCCGGAAATTCCCGAGGAATTGTCAGAAGACGGGAAGGATTTTCTAAGGAAGTGTTTGGTGAAGGATCCTGAGAAGAGATGGACGGCCGAGATGCTTCTGAAGCATCCCTTCATAAATCAGGACGATGAAGATTCGTCGCCGAGAAGTCACTTCGATTTTCCAGATTGGATTTCGAGCACAAGTAGTCTGCCTCCGAATTCGCCGGAATCAGAAGAATGGCGTGAATGGAAATTTGACACGTCGTCGAGTGTTACTAGTTTCTGTTCGCCGGTTGATCGACTCCAGCAAATGGTGACGGATCAGAGACCCAATTGGTCGGAATCGGAATCTGAAAATTGGGTGGTTGTTAGGCGAGAATAG 1068 0.4785 MSWVRGNFIGRGSFSTVHLAVPTNSTASEIISAPTAVKSSEVFCCSFLKNEKEVLDCLGFCPQIIQCYGDGYSFDNGGEYYNLFLEYAACGSLADHIKNRSGRLPESDVRRYTMSIVKGIQHIHARGFVHCDIKLQNILLFDNGDIKIADFGLAKRTGEKEEQSKGEKQREWRGTPLFMSPESVKDNVYDSPADIWSLGCAVVEMVTGKPAWNSPKGSELNSIYSLLLRIGVGEELPEIPEELSEDGKDFLRKCLVKDPEKRWTAEMLLKHPFINQDDEDSSPRSHFDFPDWISSTSSLPPNSPESEEWREWKFDTSSSVTSFCSPVDRLQQMVTDQRPNWSESESENWVVVRRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0132 355 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0132 355 ProSiteProfiles Protein kinase domain profile. 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0132 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Lele54g0132 355 SUPERFAMILY Protein kinase-like (PK-like) 3 322 IPR011009 -
Lele54g0132 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 333 - -
Lele54g0132 355 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0132 355 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Lele54g0132 355 CDD STKc_MAPKKK 2 274 - -
Lele54g0132 355 Gene3D Transferase(Phosphotransferase) domain 1 2 350 - -
Lele54g0132 355 MobiDBLite consensus disorder prediction 335 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0132 Lele-ChrLele54 1113410 1114477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0132 1 353 MAP Kinase Kinase Kinase AT4G36950 50.970 4.40e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele54g0132 Pkinase 1.4e-57 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0279 49 1642312 1643373 Lele54g0132 54 1113410 1114477 CCT
Lele54g0132 54 1113410 1114477 Lele49g0274 49 1601326 1606700 CCT
Lele54g0132 54 1113410 1114477 Lele50g0284 50 1665028 1670752 CCT
Lele54g0132 54 1113410 1114477 Lele51g0287 51 1617682 1622980 CCT
Lele54g0132 54 1113410 1114477 Lele52g0293 52 1736901 1742495 CCT
Lele54g0132 54 1113410 1114477 Lele55g1360 55 19993681 19994742 hybridization
Lele54g0132 54 1113410 1114477 Lele56g1303 56 16282964 16284025 hybridization