Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0128 ATGGAGCAGCGGAAACTCGTGGTTCTGGGTATTCCATGGGAGGTGGATACTGAGGGGTTGAAAGAATATATGAGCAATTTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAGTTGATGATGCTAAGAAAGCATTATCAAGCGAACATGTTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAGAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTATACATGCCAAAGGACCAGGGCTCGAAATCACACCGTGGAATTGGTTTTATAACTTTTGCTATTGCAGAATCTGTGGAGAATTTAATGGCAGATACTCATGAATTGGGAGGTTCCACTGTGGTGGTTGATCGGGCAACACCAAAGGAAGATGATTTCAGGCCTATTGGCAGAATGTCGCAGGGAGGGTATGGTGCATATAATGCATATATATCTGCAGCAACTCGATATGCAGCACTTGGTGCTCCAACTTTGTATGACCATCCTGGCTCAGTTTATGGAAGGGGAGAACCAGTTCGTGGAATGGGCAAAAAAATTTTTGTTGGCCGTCTTCCCCCTGAAGCAACAGCTGATGATCTTCGCCAGTATTTTGGAAGATTTGGCCGTATATTAGACGTATATGTTCCAAAGGATCCCAAGAGAGCGGGCCATAGAGGTTTTGGTTTTGTAACTTTTGTTGAAGATGGTGTGGCAGAGCGTGTCTCTCGTAGGTCTCATGAAATTTGTGGACATCAGGTTGCTATAGATTCGGCCACACCTGTTGATGATGCTGGGCCCAGTTCGAATTTTATGATGAGCAGTGTGGATACTTTTGGGGGATATGGTGGTCCTATGCGCACCTATGGGAGGATGTATGGTAGCCTAGACTTCGATGATTGGGGTTATGGAATTGGCAATGCGAGACCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1080 0.4481 MEQRKLVVLGIPWEVDTEGLKEYMSNFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKKALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKSHRGIGFITFAIAESVENLMADTHELGGSTVVVDRATPKEDDFRPIGRMSQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPVRGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFVEDGVAERVSRRSHEICGHQVAIDSATPVDDAGPSSNFMMSSVDTFGGYGGPMRTYGRMYGSLDFDDWGYGIGNARPSRADWRYRPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0128 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lele54g0128 359 Gene3D - 86 194 IPR012677 -
Lele54g0128 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Lele54g0128 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Lele54g0128 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lele54g0128 359 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Lele54g0128 359 FunFam RNA-binding family protein isoform 1 221 304 - -
Lele54g0128 359 Gene3D - 222 304 IPR012677 -
Lele54g0128 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Lele54g0128 359 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Lele54g0128 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lele54g0128 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Lele54g0128 359 Gene3D - 1 85 IPR012677 -
Lele54g0128 359 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Lele54g0128 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Lele54g0128 359 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 223 318 - -
Lele54g0128 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Lele54g0128 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 281 IPR000504 GO:0003723
Lele54g0128 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0128 Lele-ChrLele54 1077346 1081843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0128 5 293 Eukaryotic Initiation Factors Gene Family AT2G23350 26.102 5.33e-14 71.2