Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0123 ATGACGCAGCGGAAGGTGCCGGCACCGTTTCTGACGAAGACGTACCAATTGGTGGATGATGTGCGGACCAACGACGTGATATCGTGGAGCGAAAGCGGCGACACATTCGTGGTGTGGAAGCAAGCGGATTTCGCCAAAGATTTGCTTCCCAATTATTTCAAACACAACAATTTCTCCAGCTTCGTTCGGCAGCTTAACACCTATGGATTCCGAAAGATAGTCCCCGACAAATGGGAATTCGCGAACGAATATTTCAAGCGAGGACGCAAGGAGATCCTCTCCGAGATCAAACGCCGGAAGACTCTCACACAGTCCTCCGGGAAGTCCGGCAGCGGCGGAGGCGGCAATTCCGCATCGAACTCCGGAGCCGGCGACGACGTGGGATCCACCTCCACTTCGTCGACCGATTCGAAGAATAACCCGGCGGGGTCGGCAGAGACGAAAATGGCTCCGGAATACGCAGAGTTATCTGGAGAGAACGAGAAACTGAGAAAAGATAACGAAATTCTGAGCTCAGAGCTGGCGGAAGCGAAGAAGCAATGTGAGGAGCTGGTGGGTTTTCTGACGGAGTACCTGAAAGTGGGGCCCGATCAGATAAATCGTATAATGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGAAGGAGGAGGAGGAGGAGGACAAGAAGATGAAGACGAAACAAAGGGGGTAGGTGAAGGCGGAGAAAGTTTGAAACTGTTTGGGGTTTGGTTGAGAGGTGAGAAAGAAACGACGAAGGAGGAGGAGGAGGAGAAAACGAGGAGCAACAACGACAACAAGAGAGCGCGCGAAGACCAAATGGCCTTTGGTGGGACCCACCCATCAAAGAAGCTGAAGACTCTGCATTTTGGTGCTTATCCTGTGAAGGACAAACGTCCAAAGAGCACAGAAGCCCAGGGTGCTCTAGGCCCACCAACATTTTGTATAAATGAACAGCCCAATTCCACTCCGTATTATGGCCCAATACAATCTCACTCCATTTCCCAAAAGAAATTAAGGAGGAGTATGGAGAAAGCTCCCCTTCCTGCTTGA 1050 0.5162 MTQRKVPAPFLTKTYQLVDDVRTNDVISWSESGDTFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKEILSEIKRRKTLTQSSGKSGSGGGGNSASNSGAGDDVGSTSTSSTDSKNNPAGSAETKMAPEYAELSGENEKLRKDNEILSSELAEAKKQCEELVGFLTEYLKVGPDQINRIMRQGTSGSSREEGGGGGGQEDEDETKGVGEGGESLKLFGVWLRGEKETTKEEEEEKTRSNNDNKRAREDQMAFGGTHPSKKLKTLHFGAYPVKDKRPKSTEAQGALGPPTFCINEQPNSTPYYGPIQSHSISQKKLRRSMEKAPLPA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0123 349 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 Coils Coil 251 271 - -
Lele54g0123 349 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 MobiDBLite consensus disorder prediction 314 335 - -
Lele54g0123 349 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 Coils Coil 153 180 - -
Lele54g0123 349 Gene3D - 146 189 - -
Lele54g0123 349 MobiDBLite consensus disorder prediction 217 232 - -
Lele54g0123 349 MobiDBLite consensus disorder prediction 96 160 - -
Lele54g0123 349 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g0123 349 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lele54g0123 349 MobiDBLite consensus disorder prediction 195 349 - -
Lele54g0123 349 MobiDBLite consensus disorder prediction 103 144 - -
Lele54g0123 349 Gene3D - 2 101 IPR036388 -
Lele54g0123 349 FunFam Heat stress transcription factor B-4 2 100 - -
Lele54g0123 349 MobiDBLite consensus disorder prediction 245 273 - -
Lele54g0123 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 260 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0123 Lele-ChrLele54 1043316 1047482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0123 3 256 HSF AT4G36990 56.299 3.65e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele54g0123 HSF_DNA-bind 7e-32 CL0123