Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0110 ATGGTGAACCCAAGATGCTATCTGGACATTAGCATTGGAGGAGAGTTAGAGGGTAGGATTGTGATCGAGCTCTTCAAAGACGTCGTCCCCAAGACTGCCGAGAATTTCAGGGCTCTCTGTACTGGTGAGAAGGGCCTCGGTCCCAACACCGGAGTTCCCCTTCATTACAAGGGAGTCCGTTTTCATCGCGTCATTAAAGGTTTCATGGTGCAAGGTGGAGATATCTCAGCTGGCGATGGCACTGGAGGAGAATCCATTTATGGCTTGAAATTTGAGGATGAGAATTTTGAGTTGAAACATGAGAGGAAAGGGATACTGTCGATGGCTAATTCAGGTACCAACTCCAATGGGTCACAATTTTTCATTACTACTACTCGGACTCCTCATTTGGATGGAAAGCACGTGGTGTTTGGAAAGGTGATAAAAGGAATGGGTTTTGTGCGTTCTATTGAACATGTTACCACTGGGGAAGGTGACTGTCCCACCCAAGATGCCATCATTGCTGATTGTGGAGAAATAGCTGAAGGGGATGACGATGGAACCATAAACTTCTTTAAAGATGGCGATACTTTTCCTGATTGGCCAGCTGACCTAAGCGTGAAGCCAGACGAAATTTCTTGGTGGATGGAGGCTGTTCATTCAATCAAAAGTCTGGGAAATGAACAGTATAAGAAGCAAGAATTTAAGTCTGCTCGTCGCAAGTATCGTAAAGCTTTGCGCTATTTGGATGTCTGCTGGGAAAAGGACGACATTGATGAAGAGAAGAGCTCTGCTTTAAGGAAGACAAAATCTCAAATTTTTACCAATAGTTCGGCTTGTAACTTGAAATTAGGCGATCCACAAGCAGCATTGTTGGATTCAGATTTTGCATTGCATGATGGAGATAATACAAAGGCCCTGTTCCGCAAAGGCCAGGCATGCATGGCACTCAATGACCTCGATGCTGCCGTTGAAAGCTTCAGAAAAGCATTAGAGTTGGAGCCAAATGATGGAGCAATTAAGAAAGAGCTTGCGGCTGCAAGGAAAAAGGTTGCTGATAGACGTGACCAAGAGAAAAAAGCTTATTCCAGAATGCTTAAATTGTCTTTTAAATCATCAGAATTGGAACTTGCATGCCTTGATGTGCCTCGTATATTTTCTGATGGAATGTGTTCCAATCTCAGCTTTGACCATCCGAATTATGCTGAGATCGTTGTAATACGTCATGGTGAAACAGCATGGAACGCTGATGGAAGAATACAGGGGCATCTGGATGTTGAGTTAAATGAAGCTGGAAGAGCGCAAGCAGCTGCAGTGGCTGAAAGACTATTTAGGGAACCAAAGTTCTCTGCTGTGTATTCTTCTGACTTGCAACGAGCTTATGAGACAGCACAGATCATTGCAATCAAATGTGGAGGGCTAGAGGTCGTCAAAGACCCTGACCTAAGGGAAAGACACCTAGGGGATCTTCAAGGCCTTTCCCGTCGTGAAGCATCAAAGACTAATCCCACAGCTTACAGAGCTATGGATCGAGGTGAAGAAATACCAGGTGGTGGAGAAAGTCTTGATCAACTTTCCAAACGCTGCACATCTGTATTGCAGAGGATAGGCATGAAGCATTTAGGGGAGCGGGTAGCAGTTGTTAGTCATGGAGGTTCCATTAGATCACTTTACAGGAGGGCCAATAACAAAAACAAGCGTTGTGGGATGATACTCAACACGTCTGTGAATGTGTTTCACTTGTATGAAGACAAGTGGATTATAAAATCTTGGGGGGATGTTAGCCATCTGACGCAAACAGGATTTCTGCAGTCGGGCTTTGGTGGTGACAAAACTTCTGGTTAG 1824 0.4463 MVNPRCYLDISIGGELEGRIVIELFKDVVPKTAENFRALCTGEKGLGPNTGVPLHYKGVRFHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGILSMANSGTNSNGSQFFITTTRTPHLDGKHVVFGKVIKGMGFVRSIEHVTTGEGDCPTQDAIIADCGEIAEGDDDGTINFFKDGDTFPDWPADLSVKPDEISWWMEAVHSIKSLGNEQYKKQEFKSARRKYRKALRYLDVCWEKDDIDEEKSSALRKTKSQIFTNSSACNLKLGDPQAALLDSDFALHDGDNTKALFRKGQACMALNDLDAAVESFRKALELEPNDGAIKKELAAARKKVADRRDQEKKAYSRMLKLSFKSSELELACLDVPRIFSDGMCSNLSFDHPNYAEIVVIRHGETAWNADGRIQGHLDVELNEAGRAQAAAVAERLFREPKFSAVYSSDLQRAYETAQIIAIKCGGLEVVKDPDLRERHLGDLQGLSRREASKTNPTAYRAMDRGEEIPGGGESLDQLSKRCTSVLQRIGMKHLGERVAVVSHGGSIRSLYRRANNKNKRCGMILNTSVNVFHLYEDKWIIKSWGDVSHLTQTGFLQSGFGGDKTSG 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0110 607 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 399 408 IPR001345 GO:0003824
Lele54g0110 607 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Lele54g0110 607 SMART tpr_5 297 330 IPR019734 GO:0005515
Lele54g0110 607 SMART tpr_5 212 245 IPR019734 GO:0005515
Lele54g0110 607 FunFam peptidyl-prolyl cis-trans isomerase D 210 360 - -
Lele54g0110 607 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Lele54g0110 607 Gene3D - 1 179 IPR029000 -
Lele54g0110 607 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Lele54g0110 607 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Lele54g0110 607 CDD cyclophilin_ABH_like 4 171 - -
Lele54g0110 607 SUPERFAMILY Phosphoglycerate mutase-like 396 591 IPR029033 -
Lele54g0110 607 Pfam Tetratricopeptide repeat 298 330 IPR001440 GO:0005515
Lele54g0110 607 SMART PGAM_5 396 550 IPR013078 -
Lele54g0110 607 Pfam Histidine phosphatase superfamily (branch 1) 397 586 IPR013078 -
Lele54g0110 607 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Lele54g0110 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Lele54g0110 607 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Lele54g0110 607 Gene3D - 389 594 IPR029033 -
Lele54g0110 607 Gene3D Tetratricopeptide repeat domain 212 360 IPR011990 GO:0005515
Lele54g0110 607 CDD HP_PGM_like 396 586 IPR013078 -
Lele54g0110 607 SUPERFAMILY TPR-like 211 354 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0110 Lele-ChrLele54 881742 889281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0110 18 170 U-box Gene Family AT5G67530 44.156 9.57e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0110 54 881742 889281 Lele49g0248 49 1444066 1445650 CCT
Lele54g0110 54 881742 889281 Lele50g0261 50 1515896 1529110 CCT
Lele54g0110 54 881742 889281 Lele51g0258 51 1465097 1470995 CCT
Lele54g0110 54 881742 889281 Lele52g0266 52 1549683 1551274 CCT
Lele54g0110 54 881742 889281 Lele55g1377 55 20207165 20208892 hybridization
Lele54g0110 54 881742 889281 Lele56g1322 56 16492798 16503171 hybridization