Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0105 ATGATCCAAGAACTGTTGGGTGGTTCTTATGGATTTTTATCATCGGGAGATAGGAAAATCTCCATAAACGCAGCTTCTGTTCTTGCACCTCCGCCCATACCATCTCCTTCTCTGCCTTCTTCTGCCGCCGCCACCACCTCTGGTGGTGGTGTTGCTGGTAATACCGCTGCTGCCACCTCGTCGAATTCAGAGAACCAGAACTTGAGGTGTCCGCGATGCGATTCATCAAACACGAAATTTTGTTACTATAACAACTACAATCTCACCCAGCCACGCCACTTCTGCAAGACATGCCGCCGGTACTGGACCAAAGGAGGTGCTCTGAGAAACGTTCCAATCGGAGGTGGTTGCCGGAAAAACAAGACCGTCAGCGCGTCGTCCAACTCCGTGGCGGCAGGGAAGGCTAGTGTGGGTGTGGCTAAGATGAAAACGGCTGCGTCTGAGCTTGGAAGTAGGTCAGGACCTGGTGGCGGCGTCTTCGATCATCAGGAGCTTCCTGCAAGCCCAATTTTGTGGGGCTCGCCTCAAAATTCTCATGTGTTGGCTTTGCTGAGAGCTAGCCAGAACCATAACCATAACCCTACCTCTTGTCCGAACAATCCCATACCTAATATTGGTATGACTCTGAAGGAAGAAGGGAACTTGATGAGATCCCACATGGTGACTGAACCAATGGGCTCTAATGGCCTTCTGAATAATGTTCCTCCAACCTCAAGCTTTGATCCTTCCCTTGGTCTCACGAGCTATTTCTGGAGAAACCACAATCTCGATCATCAGCCAGCAGCTCATCATCAACCACAAAATGGAGGATTCGTGTTCGGCGAGCACCAAAACAGTGGGATCCAAGAACTCTACCAGAGACTCAGGTCTTCATCTTCTTCAGCTAACTATTGCAGTGACGACTCATCATCATCGCTGTTTCTAAGCAACAACATGGCTTCTTCTTCTTCTTCATTATCATTATCTTCCTCTGTGGCCATTTTGGATTCATCTACAACTCCAGCAAATGGGAGTGGAATTGGATTGGGGTACTGGAATCAACCTCTTTTCTGGTCTGATCTTCCAACGACCAATGTTGCACGTCCGTAA 1089 0.4885 MIQELLGGSYGFLSSGDRKISINAASVLAPPPIPSPSLPSSAAATTSGGGVAGNTAAATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTVSASSNSVAAGKASVGVAKMKTAASELGSRSGPGGGVFDHQELPASPILWGSPQNSHVLALLRASQNHNHNPTSCPNNPIPNIGMTLKEEGNLMRSHMVTEPMGSNGLLNNVPPTSSFDPSLGLTSYFWRNHNLDHQPAAHHQPQNGGFVFGEHQNSGIQELYQRLRSSSSSANYCSDDSSSSLFLSNNMASSSSSLSLSSSVAILDSSTTPANGSGIGLGYWNQPLFWSDLPTTNVARP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0105 362 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Lele54g0105 362 MobiDBLite consensus disorder prediction 39 68 - -
Lele54g0105 362 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Lele54g0105 362 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Lele54g0105 362 MobiDBLite consensus disorder prediction 36 68 - -
Lele54g0105 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 277 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0105 Lele-ChrLele54 841971 843059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0105 29 121 C2C2-Dof Transcription Factor Family AT5G65590 59.140 1.99e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele54g0105 zf-Dof 2.8e-32 No_clan