Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0085 ATGATGAAGTGGGCCGCAAGGAAGGCGCTGGGAATTAATGGGGTTGGCAGTTGGAAAGATAAAGCAGATCGGAGGAGTGATTTGCAAAAACACTTACTGCAAAGAGCAACAAAGAGAAAGAAAAGGAGAGACAGAGAAAGAAAGAGACGACAGGCGACAGAGCGACAACACAGCCCCGAAAGAAAAATAAGAGTGCGAGTTTGTGTATGTGTATGTGTGTGTGAGAGAGAGAGAGGGAGAGAGAAGAAATTGAACAAGCTTTCAATACCGCAGAAGGGAAAACGATGTCTGAGAGCTTTACATCCTTTCATACCCTGCAACTCTAAGAGTAAGTTGAGGAGAGGAGAAGAAGAAGACGACGACAATGATGAACAACAAGATTTTAACATGGGAATAGCAACACCGCCGATTCTTTCTCACTCCTCCGTCAGGCCCCACCATTCATTTTCTTCCGTGTTAGACTCCAATTCTATGTCCCAAGATTATCACCAAGGAATCTTCACCTTCTCGAATGGGTTCGAGAGATCCACTCTAACTCAGCAGCAGCAGCAACAGTTAGCGCAGCAGATCCGGAGAGACAAGGTGAGGGTGCAAGCTGGTTTGGACCCGCCGCCGCCGCTAGTGGGTATAGAGGAAGAATCTGGAAACCTTCCCGTTTATGAAACCGGAGGGATGTTATCCGAGATGTTCAATTTCCCTCCTCCCGGCGCCACCGCCACTGAATTGTTGGAACAACAACACCAGCAACCCGCTGCGACGGCGATGTATCGGGCCTCCAGGCCTCAGCCCATGGCCACTGATTGGTACAGACAAGGGATGTTAAGCGGGTTGGGAGATTCAAAGAATCAGAATAGCCGTGACAACAGTATACTAGAGCAACATCATCATCCTCAGATTTCAAGCATGAATGCGGACTCAGCTGCCGCCATGCAGCTTTTTCTGATGAACCCACAAACAAGATCGCCTTCTCCTACTACTCAGAATCACACTACTCCTAATTCAACTTCTCTCCAAGGCTTCAGTACTCATCAAGGAGGGGGTTTCGGTCAATTCACATGGCTTCCCCATAGTTCTCAGCAAGGAGCACCGACCACGGCCGGTAATCCACCACAAATTGGAGGGGTTATGGAAGCTCAAGGTCTTTCCTTATCGTTATCGTCGTCGTTGCAACACTTGGAAGCGTCGAAAGCTGAGGAATTGAGGATGGGAGACAGCGGGTTTCTGTATTACAATCAAGGATCCGGAGGGTCTTCGTCTGCTCAGTATCCGTACAAGACATTGCATTTCCAAGGGTCCGTCGGAGCAGGTCAGAACCACCAGGGACATGTCGGGTTTGGGTCATCATTAGGGGTGGTGAACGTGCTGAGGAATTCAAAGTACGTGAAAGCTGCACAAGAATTGCTCGAAGAATTCTGTAGTGTTGGGAGGGGTCAGTTCAAGAGGAACAAGTTCAGCAGGCAAAACTCAAACCCTAGTTCCACCCCTGGCGGTGGCGGTTCTTCATCTTCATCTAAGGATCTCCCTCCTTTGTCATCGGCCGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTGCTATCCATGCTTGACGAGGTGGATCGGAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTGAACTCATTCGATATGGTGATGGGATTCGGGTCTGCGGTGCCATACACGACGTTAGCTCAGAAGGCGATGTCACGCCATTTCCGGTGTCTGAAGGATGCGGTAACGGCGCAGCTGAAGCACAGTTGTGAGTTGCTGGGGGAGAAAGACGGAGTAGGAAGCTCAGGGATAACCAAAGGAGAGACACCAAGGCTGAAACTTCTGGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCCTGGCGACCCCAAAGAGGCCTCCCTGAGAGATCCGTCAACATTTTGCGAGCCTGGCTCTTCGAGCACTTTCTTCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGCCTCTCGAGAAATCAGGTATCGAACTGGTTCATTAATGCCAGGGTCCGGCTGTGGAAACCTATGGTAGAAGAAATGTACCAACAAGAACTTAAAGAAGCAGAAGGAGAAGAGAGAGAAGAAAGGAACCAAAGCAGCAACAACAACAGCAGCAGTAACCTCGCACAAACTCCAACCACAGCAGCAGCAACTTCAACAGAAGCAGCGCCACCACCATCCACAACAACGACACCAACAACGACACTCACAACAACAGCTGCTGCAGCAGGCAAAAGATCCCAAATCAATGCTTCTGATAGCGACCCTTCACTCATTGCAATCAATACCCAGCCCTTCTCGGAATCCCAACCACACCGCTCTCCCTCTGCCATCACCACCGCTCCTACCGTCGCACTTGCCGCCACTTCTGAGGTGGCGCCACCCTCGTCTCAGTGTTATGACTCAGGCCTGGCCCCTCACAGATCAATACCTGCAGATGACACGTGTCGCCACGGCGGCCTCATTACAGCAGATTACGGGACCGCCTCTGGTAATTCTGACATTGGTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCCCTCACCCTAGGGCTACGCCACGCCGGCAACATCCCTGAGAAAGCCCCTCCTTTCTCTGTTAGAGACTTCGGAGGCATTTGA 2691 0.5061 MMKWAARKALGINGVGSWKDKADRRSDLQKHLLQRATKRKKRRDRERKRRQATERQHSPERKIRVRVCVCVCVCERERGREKKLNKLSIPQKGKRCLRALHPFIPCNSKSKLRRGEEEDDDNDEQQDFNMGIATPPILSHSSVRPHHSFSSVLDSNSMSQDYHQGIFTFSNGFERSTLTQQQQQQLAQQIRRDKVRVQAGLDPPPPLVGIEEESGNLPVYETGGMLSEMFNFPPPGATATELLEQQHQQPAATAMYRASRPQPMATDWYRQGMLSGLGDSKNQNSRDNSILEQHHHPQISSMNADSAAAMQLFLMNPQTRSPSPTTQNHTTPNSTSLQGFSTHQGGGFGQFTWLPHSSQQGAPTTAGNPPQIGGVMEAQGLSLSLSSSLQHLEASKAEELRMGDSGFLYYNQGSGGSSSAQYPYKTLHFQGSVGAGQNHQGHVGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFSRQNSNPSSTPGGGGSSSSSKDLPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGSAVPYTTLAQKAMSRHFRCLKDAVTAQLKHSCELLGEKDGVGSSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAEGEEREERNQSSNNNSSSNLAQTPTTAAATSTEAAPPPSTTTTPTTTLTTTAAAAGKRSQINASDSDPSLIAINTQPFSESQPHRSPSAITTAPTVALAATSEVAPPSSQCYDSGLAPHRSIPADDTCRHGGLITADYGTASGNSDIGSTLIRFGTTAGDVSLTLGLRHAGNIPEKAPPFSVRDFGGI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0085 896 Coils Coil 698 718 - -
Lele54g0085 896 Pfam Associated with HOX 454 582 IPR006563 -
Lele54g0085 896 CDD homeodomain 635 696 IPR001356 GO:0003677
Lele54g0085 896 MobiDBLite consensus disorder prediction 719 779 - -
Lele54g0085 896 MobiDBLite consensus disorder prediction 317 367 - -
Lele54g0085 896 MobiDBLite consensus disorder prediction 317 374 - -
Lele54g0085 896 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 322 724 - -
Lele54g0085 896 MobiDBLite consensus disorder prediction 482 509 - -
Lele54g0085 896 MobiDBLite consensus disorder prediction 19 58 - -
Lele54g0085 896 SUPERFAMILY Homeodomain-like 637 702 IPR009057 -
Lele54g0085 896 SMART prehox3 449 583 IPR006563 -
Lele54g0085 896 SMART HOX_1 635 699 IPR001356 GO:0003677
Lele54g0085 896 MobiDBLite consensus disorder prediction 482 516 - -
Lele54g0085 896 MobiDBLite consensus disorder prediction 34 48 - -
Lele54g0085 896 Gene3D - 638 700 - -
Lele54g0085 896 ProSiteProfiles 'Homeobox' domain profile. 632 695 IPR001356 GO:0003677
Lele54g0085 896 MobiDBLite consensus disorder prediction 705 779 - -
Lele54g0085 896 Pfam Homeobox KN domain 652 691 IPR008422 GO:0003677|GO:0006355
Lele54g0085 896 MobiDBLite consensus disorder prediction 19 33 - -
Lele54g0085 896 FunFam BEL1-like homeodomain protein 4 638 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0085 Lele-ChrLele54 710039 719138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0085 152 682 Homeobox Transcription Factor Family AT4G36870 49.668 2.76e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele54g0085 POX 5.4e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0220 50 1314140 1317007 Lele54g0085 54 710039 719138 CCT
Lele51g0222 51 1250269 1253880 Lele54g0085 54 710039 719138 CCT
Lele52g0224 52 1333948 1336842 Lele54g0085 54 710039 719138 CCT
Lele54g0085 54 710039 719138 Lele54g0085 54 710039 719138 ECH
Lele53g0084 53 640629 647493 Lele54g0085 54 710039 719138 ECH