Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0083 ATGGGTTCGTTTACAAAGTTGATTAAGGGCTCCAACCTTGAGATTTCAAGGGGGCAATATCATGGGGAATATGGAAACGACACAATTTGGGAAGACCATCGTAATTCAGTGGATGATTTGACTGATATTGAAAAAGAAGACATTGATCTAGCAATTGCACTCTCTCTATCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGTATGACTCAGAGTCAGAAGATGAAGAACTTTGTCCACTTGATGATGAGGAAGATGAACATCATGGTAAAGTTCATGAAGAGGAAGCTGAAATTCTTGATATCATTCAAAACAATGAAGATGAACATCACCCAAAACTTCAACTTGAGGAAGATGAACAACTTGCGAGAGCAATTCAAGAAAGTTTAAGCATGGGTTCTCCTCCTCGATATGACGCGGGTTCTATATTTCAGCCATTTTCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAACGCTGAGATTGGCCATGGAAGATTTTTAAGCTGTATGGGAGGTGTCTGGCATCCCGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATTACTGATCATGAGTTTTCCATTTCTAGCAATCGCCCTTACCACAAATCCTGCTACAGGGAGCAGCGTCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACAAATTCAGCTGGCCTCATTGAATATAGAGAGCACCCTTTCTGGCTACAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAGGGACGCTAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATTATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACCGTCACCACTATTTTAAGGAGACCAAGGATTGGAGCAGGCCGTAGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGTTAACAGGATCAATCCTTGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCAGAAGTTGAAGAAGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGGATCTGGGAGCGATGGTGCATCGTCCTCCTCGGCTTCTTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCGTCAAAGAAGGGCAAAAGGCCCGACTTTGAGAAGAAACTAGGCGAGTATTTTAAACACCAGATTGAGTCAGATACCTCATCAGCTTATGGAGATGGATTCAGATTGGGTACCCAGGCAGTGCTCAATGATATGGAGGTCTCGGAATTAACCTCGGAACAGGTTTTGAGGAGGGATATCCCGTGGGAGACCTACATGGCGACTAAGCTGATCTCAGGCACAAGCCTTCAGCTCTTGAGGCGTTATGATCATCGATCGCAAAGTCACAGAGAACAGTTGTTGGATGATGATGGTCCGGCTTACATTCGTGTATTTGTTCATGTTTTGCATGATGTTTCTAAAGAGGAGACTGTAGAATATGCTTTGGCGTTGGTGGACGAGATGCTTGCAGCAAACCCAAAAAGGGCTAGATTGTTTCATGATAAGTCCCTTGCTGATGTAGATACCTATGAACCTTTCTTAAGATTGCTCTGGAAAGGGAATTGGTTCATACAAGAAAAAAGTTGTAAGATCCTTGCTTCAATAGTTAGCGTCCGGCCAAAAAATCAAAATGGCTTTGTTACAAATGGAGAAGCATCAAACTCAAAGAGACCGCTTTCTACAATTGATGATGTTTTGACAGCATTGGTGAAATGGCTTTGTGAACAGCTGAAGAAACCTTCTCATCCTAGTCGTGGCGTCCCAACTGCTGTCAATTGCCTGTCAACTTTACTCAAGGAACCCATGGTTAGATCTTCCTTTGTTAAAGCAGATGGGGTCAAGTTTCTTGTACCTTTGATTTCACCAGCATCCACTCAACAATCAATTCAGCTTCTTTATGAAACGTGCCTCTGCATATGGCTTTTGTCCTATTATGAGCCTGCAATTGAATACTTGGCTACTTCAAGATCCCTTCCGCGACTTATCGATGTCATAAAGAGCTCTACAAAAGAAAAGGTTGTTAGAGTTGTTGCCTTGACTTTTAAAAACTTGCTTTCAAAAGGAACATTGGGTGCGCAAATGGTTGACCTTCAGCTGCCACAAGTTGTTCAGAATTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTAAATTACCTGGAAGAAGGGCTTAGGGATAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTTTTGGCAATCTGGACTGGTCTCCCATGCATAAAGATCCCATATTTTGGCGAGAAAATATCACCAACTTTGAAGAGAATGACTTCCAGATTCTAAAAGTCCTAATAACAATTTTGGACACGTCTGGGGATCCGAGGACTCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTCATAAATTACCATACTGCTGGGAGGGTCATCGTGACGAACCTTAAAGCGAAAGAACGAGTCATGAAACTGATGAATCATGAGAACGCCGAGGTCACTAAAAATGCGCTGTTATGCATCCAAAGGCTTTTCTTAGGTGCCAAGTTTGCAAGCTTCCTGCAGGCTTAG 2892 0.4257 MGSFTKLIKGSNLEISRGQYHGEYGNDTIWEDHRNSVDDLTDIEKEDIDLAIALSLSEEDQKGKKVIEYDSESEDEELCPLDDEEDEHHGKVHEEEAEILDIIQNNEDEHHPKLQLEEDEQLARAIQESLSMGSPPRYDAGSIFQPFSLFSTGYRICAGCNAEIGHGRFLSCMGGVWHPECFRCQACNLPITDHEFSISSNRPYHKSCYREQRHPKCDVCKNFIPTNSAGLIEYREHPFWLQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGRRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSGSGSDGASSSSASSSSSSPSSSSSTSSKKGKRPDFEKKLGEYFKHQIESDTSSAYGDGFRLGTQAVLNDMEVSELTSEQVLRRDIPWETYMATKLISGTSLQLLRRYDHRSQSHREQLLDDDGPAYIRVFVHVLHDVSKEETVEYALALVDEMLAANPKRARLFHDKSLADVDTYEPFLRLLWKGNWFIQEKSCKILASIVSVRPKNQNGFVTNGEASNSKRPLSTIDDVLTALVKWLCEQLKKPSHPSRGVPTAVNCLSTLLKEPMVRSSFVKADGVKFLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRSLPRLIDVIKSSTKEKVVRVVALTFKNLLSKGTLGAQMVDLQLPQVVQNLKAQAWSDEDLLEALNYLEEGLRDNIKKLSSFDKYKQEVLFGNLDWSPMHKDPIFWRENITNFEENDFQILKVLITILDTSGDPRTLAVACFDLSQFINYHTAGRVIVTNLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKFASFLQA 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0083 963 CDD LIM_DA1 157 209 - -
Lele54g0083 963 FunFam V-type proton ATPase subunit H 854 955 - -
Lele54g0083 963 CDD LIM 184 259 - -
Lele54g0083 963 Pfam V-ATPase subunit H 840 952 IPR011987 GO:0000221|GO:1902600
Lele54g0083 963 ProSitePatterns LIM zinc-binding domain signature. 157 191 IPR001781 -
Lele54g0083 963 MobiDBLite consensus disorder prediction 446 470 - -
Lele54g0083 963 Gene3D Cysteine Rich Protein 148 215 - -
Lele54g0083 963 Gene3D - 855 955 IPR038497 -
Lele54g0083 963 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 244 - -
Lele54g0083 963 SMART arm_5 707 751 IPR000225 GO:0005515
Lele54g0083 963 SMART arm_5 913 953 IPR000225 GO:0005515
Lele54g0083 963 SMART arm_5 752 793 IPR000225 GO:0005515
Lele54g0083 963 SMART arm_5 553 597 IPR000225 GO:0005515
Lele54g0083 963 FunFam Protein DA1-related 1 151 210 - -
Lele54g0083 963 MobiDBLite consensus disorder prediction 69 88 - -
Lele54g0083 963 Pfam V-ATPase subunit H 518 834 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele54g0083 963 Pfam Protein DA1 306 509 IPR022087 -
Lele54g0083 963 PANTHER PROTEIN DA1-RELATED 2 4 510 IPR045218 -
Lele54g0083 963 SUPERFAMILY ARM repeat 519 953 IPR016024 -
Lele54g0083 963 Gene3D - 504 842 IPR011989 -
Lele54g0083 963 SMART lim_4 156 208 IPR001781 -
Lele54g0083 963 MobiDBLite consensus disorder prediction 446 475 - -
Lele54g0083 963 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Lele54g0083 963 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 182 - -
Lele54g0083 963 Pfam LIM domain 157 211 IPR001781 -
Lele54g0083 963 SMART uim 43 62 IPR003903 -
Lele54g0083 963 SMART uim 117 136 IPR003903 -
Lele54g0083 963 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0083 Lele-ChrLele54 667468 682968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0083 512 963 Primary Pumps ATPases(2) AT3G42050 75.664 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele54g0083 V-ATPase_H_N 3.9e-82 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0083 54 667468 682968 Lele55g1416 55 20450665 20455620 hybridization
Lele54g0083 54 667468 682968 Lele56g1349 56 16690788 16695893 hybridization