Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0082 ATGCGCATCCAGCTTGCCAGGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGCCCGAGGCAACCAACATAATCATCCATGGACTTCGGGCGCATGCAAGCCTCAAGGTCCAGGGATGGTGATGGGTGGTGAAGGGAAGGTCATATCTCTGGGCCAAGTCGATGGAGACGCAATAAGACTGGTTTCGGCTTCCAAGATTTGGATCGATCACAACACTCTCAACAGGTGCTCAGACGGCCTCCTGGACGTCACAAGAGGTTCCACCAACGTGACGTTGTCCAATAACTGGTTCAGAGACCATGACAAGGTTATGCTTCTTGGGCACGACGATGGCTACGTCAGAGACCAGAACATAGTCTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCCAGGATAAGACATGGGTATGCTCATGTGGCCAACAATCTGTACCAAGGATGGGTGCAATACGCCATTGGTGGCAGCATGGAGCCCAGCCTCAAAAGTGAAGCCAGCCTCTTCATAGCACCAACCTCGGGGAGTAAAGAGGGGACATAG 546 0.5275 MRIQLARPLLISSFTAIDARGNQHNHPWTSGACKPQGPGMVMGGEGKVISLGQVDGDAIRLVSASKIWIDHNTLNRCSDGLLDVTRGSTNVTLSNNWFRDHDKVMLLGHDDGYVRDQNIVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEASLFIAPTSGSKEGT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0082 181 SUPERFAMILY Pectin lyase-like 7 175 IPR011050 -
Lele54g0082 181 Pfam Pectate lyase 53 169 IPR002022 -
Lele54g0082 181 SMART amb_all 1 176 IPR002022 -
Lele54g0082 181 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Lele54g0082 181 PANTHER PECTATE LYASE 18-RELATED 1 179 IPR045032 GO:0030570
Lele54g0082 181 Gene3D - 32 181 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0082 Lele-ChrLele54 665901 666697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0082 1 179 Polysaccharide Lyase AT5G09280 62.000 2.20e-87 256