Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0075 ATGGTTGGTGGTACTTTGATTAATGATAAAAAAATATCTCCAATGTGTTATGGCCCAGCTGAGAATGCTCATGTTGCTAAATATAGGATGGTGTTGGAACGATCTCCATTCTCATTGGATCGGAAAAAGTGGTCTAATGTGGAGAGGGAGAATCTTGCTAAGGGAATAAAGCAACAATTTCAAGAACTGGTGCTTCAAATGTCAATAAATCAAGACAAGTGGTTAAATTGTGAAGATCCCCTGATCAATCATATCCCATGGACCTGTGAGGAGGACAAGTTACCTTTGCACATAACCCAAGAGATTGGCAATAGGAACTGGTTTAAAATTGCCGTATCACTAAACACAAATAGGTCTCCATTTCAATGCTTGGCACGATACCAGAGGGGTTTAAATCCTTCCATGCTAAATAGCGAATGGACTGAGGAAGAAGATGCTCAACTTCGTTCTGCTGTTGCAATTTTGTATGTGAGCAATTGGCAGTCCGTAGCTTCTGTTTTAGAGCGGAGGACTGGAACTCAATGCTCTAATAGGTGGAAGAAGTCCCTCTGTCCTGATAGGAAAGTGAGCTTTACTGTAGAAGAAGATGAGCGCTTGATAGTGGTTGTCCATCTCTTTGGACGGAAATGGAATCAGATAGCTAGATTTGTGCATTGTTTCAGTGCTGAGGAGAGCGCCACGTGCGCATTGCCACGAAGGATCGTGGCCCGAACTACGGAACAGAAGTCTTACAACAATCGTTGGACACTGGGCGTTCAAATTCCGACAATTAACATTAGGTTGTTTGTTTGA 792 0.4255 MVGGTLINDKKISPMCYGPAENAHVAKYRMVLERSPFSLDRKKWSNVERENLAKGIKQQFQELVLQMSINQDKWLNCEDPLINHIPWTCEEDKLPLHITQEIGNRNWFKIAVSLNTNRSPFQCLARYQRGLNPSMLNSEWTEEEDAQLRSAVAILYVSNWQSVASVLERRTGTQCSNRWKKSLCPDRKVSFTVEEDERLIVVVHLFGRKWNQIARFVHCFSAEESATCALPRRIVARTTEQKSYNNRWTLGVQIPTINIRLFV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0075 263 Gene3D - 190 250 - -
Lele54g0075 263 SMART sant 187 226 IPR001005 -
Lele54g0075 263 SMART sant 40 133 IPR001005 -
Lele54g0075 263 SMART sant 136 185 IPR001005 -
Lele54g0075 263 CDD SANT 139 183 IPR001005 -
Lele54g0075 263 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 69 - -
Lele54g0075 263 Gene3D - 138 189 - -
Lele54g0075 263 ProSiteProfiles Myb-like domain profile. 132 183 IPR001005 -
Lele54g0075 263 SUPERFAMILY Homeodomain-like 135 217 IPR009057 -
Lele54g0075 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 187 IPR017930 -
Lele54g0075 263 Gene3D - 85 135 - -
Lele54g0075 263 SUPERFAMILY Homeodomain-like 72 127 IPR009057 -
Lele54g0075 263 CDD SANT 190 217 IPR001005 -
Lele54g0075 263 Pfam Myb-like DNA-binding domain 188 217 IPR001005 -
Lele54g0075 263 Pfam Myb-like DNA-binding domain 87 148 - -
Lele54g0075 263 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0075 Lele-ChrLele54 615009 619356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0075 8 217 MYB-Related Transcription Factor Family AT3G18100 46.565 4.17e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0075 Myb_DNA-bind_6 2.1e-12 CL0123