Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0069 ATGACAACATATCACTCTTCTTCTTCAGAGAGCAAGAGGCCGGTGATAACACACAACACAATTATGAATCAAAATCCTATTGAAGCTCACATGGCCATCTTCTCTCACCTTTGCCCACCCGCTTCTTACACTACTCAGATCATCCCTCAACAAGGGGAAGCTAAGCGGAGACGACGTCGTAAGAAGGAGAAAAACGAGGTAGTGGGAGCAAAGAAGAGGAAGCTGAGTGAGGAGCAAGTGAATCTTCTGGAGCTACACTTTGGGAACGAACATAAATTAGAGTCGGAGAGAAAGGACAGGCTGGCATCGGAGCTCGATCTCGATCCTCGTCAGGTGGCCGTGTGGTTTCAGAACCGAAGGGCTCGGTGGAAGAATCAGAAGTTGGAAGAAGCCTACTCCAACCTCAAGAAACTCCATGAAACCACCCTCCTTGAGAAGATCCACCTTGAAACTCAGGTTTCGAAGCTGACGGAGCAGCTTTCGGACGCAGAGAAGGAGATCCAACGGCTGTTAGGGAGAGGTGAGAGATCGGTGAACGATACAAGCAATAGCCCAAGCTCATTGCAGACAAGGGAGGCTGTGGGGGACCCACTATTCTTTGGGGAATTCGGAGTCGAAGGTTATGATGTCGACGATGAGGTCTTATTATACGCAACAGATCATTACATGGATTGCATGGAATGGCTCAGTTCGTGCATGTGA 702 0.4886 MTTYHSSSSESKRPVITHNTIMNQNPIEAHMAIFSHLCPPASYTTQIIPQQGEAKRRRRRKKEKNEVVGAKKRKLSEEQVNLLELHFGNEHKLESERKDRLASELDLDPRQVAVWFQNRRARWKNQKLEEAYSNLKKLHETTLLEKIHLETQVSKLTEQLSDAEKEIQRLLGRGERSVNDTSNSPSSLQTREAVGDPLFFGEFGVEGYDVDDEVLLYATDHYMDCMEWLSSCM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0069 233 MobiDBLite consensus disorder prediction 46 72 - -
Lele54g0069 233 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Lele54g0069 233 Coils Coil 118 173 - -
Lele54g0069 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 183 IPR045224 GO:0003700
Lele54g0069 233 SUPERFAMILY Homeodomain-like 71 133 IPR009057 -
Lele54g0069 233 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Lele54g0069 233 SMART HOX_1 69 130 IPR001356 GO:0003677
Lele54g0069 233 Gene3D - 66 135 - -
Lele54g0069 233 ProSiteProfiles 'Homeobox' domain profile. 71 126 IPR001356 GO:0003677
Lele54g0069 233 FunFam homeobox-leucine zipper protein ATHB-40 65 134 - -
Lele54g0069 233 CDD homeodomain 71 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0069 Lele-ChrLele54 567751 569204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0069 23 233 Homeobox Transcription Factor Family AT2G18550 51.111 6.65e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele54g0069 Homeodomain 5.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0206 51 1165713 1167439 Lele54g0069 54 567751 569204 CCT
Lele49g0189 49 1129608 1132689 Lele54g0069 54 567751 569204 CCT
Lele54g0069 54 567751 569204 Lele49g0183 49 1105729 1110925 CCT
Lele54g0069 54 567751 569204 Lele51g0200 51 1130663 1136197 CCT
Lele54g0069 54 567751 569204 Lele52g0200 52 1194294 1200120 CCT
Lele54g0069 54 567751 569204 Lele54g0069 54 567751 569204 ECH
Lele54g0069 54 567751 569204 Lele55g1429 55 20539376 20540845 hybridization
Lele54g0069 54 567751 569204 Lele56g1362 56 16778111 16779582 hybridization