Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0067 ATGCCTCCTGGTTATCTATCAAAGCTGAACGCTACCATGTACTGTCGTTTTCGAGAAGGACTAACTCGGCAACAAGGGGTGCGATCTTTGCTATATAGACATTCATCTGCGTCTCTTTCTTCACTTTATTCAACTTCATATATATCTCATGCCAATCCTTCCTTTTCAAGCCGTAAGCTTAAAAATGAATCAATGGCTGCTTCAACCTCCAAATCTGTAATGGGAGATGTTTGTGTCGATGATATCCTCACTAGCTGTAGCAATACGCTAGATTTCAAAAGGCCTGGTGCTGTTTCCTTTGGTGACAGAACTGGTAAAGGTTGCCTAAGAGCTCATTTGAACCTGAAAAGAAAAGATTCATTAAATAGTGCTCTTAATATTAGGTATTCGACTCTTGATGGTATTTCAAGTTGTCCTCATCGACCATGGCTGAAGAACTTCTCTAGTACATTTTGTACTTCCTACTTTGCTCGGGCAGCACACAATGTCTCATTTGACAGCAACGCTTGTGATGAACAGCTTGAAAATTCCTCCCCTACAGTAGACCCAACAATTGATGGTATCGAGACTTTGAGGCTATTTTCAGGATCTAGTTACCTACCACATCCAGATAAGGAGGAGACAGGTGGAGAAGATGCTCATTTTATTTGCACTTACGAACAAGCATTTGGTGTTGCAGACGGTGTAGGTGGTTGGGCAGAAGTTGGTGTCAATGCGGGACTGTTTTCTTGTGAACTGATGTCCAATTCAGTAAGAGCAATCGAAGAGGAACCAAAGGGTTCTATTAATCCAGCGAGGGTGTTAGAGAAGGCTCACTCAAGTACAAGAGCCAAGGGTTCATCAACAGCCTGTATCATTGCCCTTGCTGAAAAGGAGCTACATGCTATTAATTTGGGTGACAGTGGATTCATCGTGCTTAGAGATGGAAGCACCATTTTCAAGTCCCCTGTTCAACAGCATGGCTTCAATTTTACATATCAATTGGAGAGTGGCGATGGAGGTGATTTACCAAGTTCTGGCGAGGTGTTTACAGTGCCTGTTGCCGGAGGAGATGTTGTGATTGCGGGAACAGATGGATTATTTGACAACTTGTACAATAAAGAAATTACAGCAGTTGTTGTACATGCAGTTAGAACGGGACTAGGACCCCAAGTAACTGCGCAGAAGATAGCAGCGCTGGCCCGGCAGCGAGCACAAGACAGAAATAGGCAGACTCCATTTTCTGCCGCTGCTCAAGAGGCCGGCTTCCGGTATTATGGTGGCAAACTCGATGACATTACCGTTGTTGTATCATACATAACCTCAGCAAACTCCTGA 1317 0.4389 MPPGYLSKLNATMYCRFREGLTRQQGVRSLLYRHSSASLSSLYSTSYISHANPSFSSRKLKNESMAASTSKSVMGDVCVDDILTSCSNTLDFKRPGAVSFGDRTGKGCLRAHLNLKRKDSLNSALNIRYSTLDGISSCPHRPWLKNFSSTFCTSYFARAAHNVSFDSNACDEQLENSSPTVDPTIDGIETLRLFSGSSYLPHPDKEETGGEDAHFICTYEQAFGVADGVGGWAEVGVNAGLFSCELMSNSVRAIEEEPKGSINPARVLEKAHSSTRAKGSSTACIIALAEKELHAINLGDSGFIVLRDGSTIFKSPVQQHGFNFTYQLESGDGGDLPSSGEVFTVPVAGGDVVIAGTDGLFDNLYNKEITAVVVHAVRTGLGPQVTAQKIAALARQRAQDRNRQTPFSAAAQEAGFRYYGGKLDDITVVVSYITSANS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0067 438 SMART PP2C_4 188 431 IPR001932 -
Lele54g0067 438 Pfam Stage II sporulation protein E (SpoIIE) 222 431 IPR001932 -
Lele54g0067 438 Gene3D - 336 437 IPR036457 -
Lele54g0067 438 SUPERFAMILY PP2C-like 199 430 IPR036457 -
Lele54g0067 438 Gene3D - 203 327 IPR036457 -
Lele54g0067 438 ProSiteProfiles PPM-type phosphatase domain profile. 197 433 IPR001932 -
Lele54g0067 438 FunFam 5-azacytidine resistance protein azr1 202 327 - -
Lele54g0067 438 PANTHER PROTEIN PHOSPHATASE 2C 151 437 IPR039123 -
Lele54g0067 438 SMART PP2C_SIG_2 207 433 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0067 Lele-ChrLele54 549235 552359 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0201 50 1184881 1186986 Lele54g0067 54 549235 552359 CCT
Lele51g0201 51 1136982 1140277 Lele54g0067 54 549235 552359 CCT
Lele52g0203 52 1207015 1208161 Lele54g0067 54 549235 552359 CCT
Lele49g0183 49 1105729 1110925 Lele54g0067 54 549235 552359 CCT
Lele54g0067 54 549235 552359 Lele54g0067 54 549235 552359 ECH
Lele53g0065 53 507987 510883 Lele54g0067 54 549235 552359 ECH
Lele54g0067 54 549235 552359 Lele55g1432 55 20557656 20560563 hybridization
Lele54g0067 54 549235 552359 Lele56g1364 56 16800036 16802914 hybridization