Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0053 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGCGTGCGCATGTGGCATGTTTCACAGCCAGACCAATTCCTTCCCTATGCTATACGCCAACAACAATTCATATGCCTATGACTACGACGATTCCGACATTTACTCTTCTTCCTACATGCCCCCCTCCTCTTCCGTCGACTGCACGCTCTCTCTCGGCACACCTTCCACTCGTTTGACTCAAGACGAAGACAGGCGTGGCGGTGGCGCCCGCAACAGCGAACGACGTCGCTCCGTCTCCAACATGTGCTGGGATTTATCACAGTCCAATCAATCCCACAGTAGTGGCAAGTCAGGCAAAGGCGGCTCCTCCTCCAACGATCCCCTTCTCGCCCGTCGCTGTGCAAATTGCGACACCACTTCAACGCCTCTTTGGAGAAATGGCCCCAGAGGACCAAAGTCACTATGCAATGCCTGTGGGATAAGATACAAGAAGGAAGAGAGGAGAGCCTCCGCTGCAGCCGCTGCCGCTACGGCTTCGGCATCAGGCGGCGTTATGGAGTCTCAGGCGATGTACGGCCACCAGGACAATTACTGGTACGCTCAGTCGTACTCACAGGGCCAGAGAATGCCGTGCTACTCGCCGGGAATGGTGGAAGACGGCAATGGAGACTCTGACAACGGCATGTCTTTCGTCTCATGGAGACTCAACGTAACGGACAGAACGAGCCTCGTCCATGACTTTACGAGATGA 729 0.5556 MSGCGSYEGHVMGACACGMFHSQTNSFPMLYANNNSYAYDYDDSDIYSSSYMPPSSSVDCTLSLGTPSTRLTQDEDRRGGGARNSERRRSVSNMCWDLSQSNQSHSSGKSGKGGSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAAATASASGGVMESQAMYGHQDNYWYAQSYSQGQRMPCYSPGMVEDGNGDSDNGMSFVSWRLNVTDRTSLVHDFTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0053 242 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Lele54g0053 242 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Lele54g0053 242 SMART GATA_3 120 176 IPR000679 GO:0006355|GO:0043565
Lele54g0053 242 MobiDBLite consensus disorder prediction 100 117 - -
Lele54g0053 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 161 - -
Lele54g0053 242 MobiDBLite consensus disorder prediction 58 93 - -
Lele54g0053 242 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Lele54g0053 242 MobiDBLite consensus disorder prediction 100 119 - -
Lele54g0053 242 Gene3D - 122 181 IPR013088 GO:0006355|GO:0008270
Lele54g0053 242 MobiDBLite consensus disorder prediction 71 85 - -
Lele54g0053 242 PANTHER GATA TRANSCRIPTION FACTOR 18 12 242 IPR044272 GO:0003700|GO:0009908
Lele54g0053 242 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0053 Lele-ChrLele54 449670 450517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0053 4 242 C2C2-Gata Transcription Factor Family AT3G50870 40.138 7.15e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele54g0053 GATA 6.7e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0178 50 1040212 1050913 Lele54g0053 54 449670 450517 CCT
Lele51g0173 51 991765 1000252 Lele54g0053 54 449670 450517 CCT
Lele52g0176 52 1048549 1059126 Lele54g0053 54 449670 450517 CCT
Lele49g0159 49 953883 954746 Lele54g0053 54 449670 450517 CCT
Lele54g0053 54 449670 450517 Lele54g0053 54 449670 450517 ECH
Lele54g0053 54 449670 450517 Lele55g1445 55 20663817 20664654 hybridization
Lele54g0053 54 449670 450517 Lele56g1380 56 16919213 16920045 hybridization