Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0048 ATGGCATCATCATCTTGGACACCGAGGCAAAACAAACTATTTGAACGAGCTCTGGCTTTATACGATAGGGAAACCCCTGATAGGTGGCAGAATGTTGCCAGAGAGGTGGGAAAATCTGTGGAGGAGGTCAAAAGGCATTATGAGATCCTCAAAGAAGATGTCAAACGCATAGAGCATGGTCAAGTCCCCTACCCCCACTACAGAAATAACAAATAA 216 0.4491 MASSSWTPRQNKLFERALALYDRETPDRWQNVAREVGKSVEEVKRHYEILKEDVKRIEHGQVPYPHYRNNK 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0048 71 CDD SANT 5 51 IPR001005 -
Lele54g0048 71 Gene3D - 1 64 - -
Lele54g0048 71 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 70 IPR044636 GO:0003700
Lele54g0048 71 SMART sant 2 53 IPR001005 -
Lele54g0048 71 SUPERFAMILY Homeodomain-like 4 58 IPR009057 -
Lele54g0048 71 FunFam Transcription factor SRM1 1 64 - -
Lele54g0048 71 ProSiteProfiles SANT domain profile. 1 55 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0048 Lele-ChrLele54 419807 420022 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele54g0048 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0048 53 381205 385112 Lele54g0048 54 419807 420022 ECH
Lele54g0048 54 419807 420022 Lele54g0048 54 419807 420022 ECH
Lele54g0048 54 419807 420022 Lele55g1450 55 20690446 20691144 hybridization