Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0046 ATGGGAACTGATCGTGGTGAAGTAGTGGAGACAGCACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACTGAATTATTGAGATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTCTGCTTGCTAAAAAGTGCAGTTGATAAAGCTAAACTTCTTCTGCAGTATTGCTGTGAGTCCAGCAAACTCTACCTGGCTTTGACGGGAGATACAGTACTCTCAAGATTCCAAAAAGCAAGGAAATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCTTCGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCGTGACTATTGTATTGGATTCAGCTGAGGAAGAGGCTGGGAGGGTTGTAAAGGAATTACTTCAGCAAGGTTCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCAAATGATCAGACAAAAAAGATGATCTTGAGATTTTTCTTGTATCTATTGAAGAAGTATGCAAACTATATCACAGGAGAACAGATGGAAATGGTTTATCCTTATAGTGAAGGACCAATTGTACCTGAGAACAGCGGTCATCATTCTCGACATATCCATTATGTTGAACCAGAAAGATGCCATAATTATGATCAATATGATACTCACAACAGTGACATGGGTAGAGTTGAACCGCCAGAAGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTCGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATACTTGTCCAAAAACCAAGAAGAAACTGTCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTTACACTTGCTGAGCCACAACAGCGAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGCAGTTCTATGAATGATCTGCACTTGCCACTAGATCTTAGCAGCATGTCAATTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGGTTACTAATGACTTAAATTTGATGTCGAAGAAGGCCAATGACAATTCTTGGAGTCCTCAACTTAATGTGCATGTGCATGACACCGATCTGATAATTCTGTCTAAATTCCATGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAAAGATCATTTGAAATGCAATTGCCAAGCTTCGTGTTCTGTGTCTTCTGAACATTTTGTTGAACTTCTCAACGGATTTTTGAGCAGTGCATATGAACATCAAGATGTAAAAGCTCTGAGAACTGGAACTCAATTGTTAATGGAATTTGTGAATAACTGCGAAAAGGATCTATCTTATTTAAAAGAAGATACATTTGGCATGTTGGCAAGTTTCCTTGATTTGGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAGCTATCCGCAAATCAGCACAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCAATCTTAAAGATCCTGGGCTCTGACAGCAGAGAGTCCCAAGAACAAGCTATCAGAATATTGCATAATTTGTCCTTAAACAGTGAAAATTGCTCCCACATGGTGTCTCTCGGATGCATCCCAAATTTGCTGCCCTTTTTCGAGGACCAGTCCCTTTTAAGATACTGTATAGCTACATTGAAAAACCTATGTGATATTGAGGTGGGCAGGGTTTCTGTTGTGGGAACTAATGGATGCCTATCTAGAGTTGCTGAGATACTTGACACCGGCAGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGTGAAGATTATTGTCAGTTAGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACCATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATACGAAGAAGAGTCCATGAAACCAAGAATTGAAACCCAAGGTTCTGACGATCATTCTCAAGAAAAGAAATCGTCAAAGACCTCTGGATTTCTGAAGAAACTATCACCATTCTCAAAAAGCAAGAGATGA 2256 0.398 MGTDRGEVVETAPNIRSFKVHRKMCTELLRLVDRISRIFPDIEAARPRCSSGIQSLCLLKSAVDKAKLLLQYCCESSKLYLALTGDTVLSRFQKARKSLEQSLGQVQSFVPVMLAAEISQIIDNLACVTIVLDSAEEEAGRVVKELLQQGSSTSDSIENSEIKALQFAAARLNITSPKAILIEKRSIKKLLDKVGPNDQTKKMILRFFLYLLKKYANYITGEQMEMVYPYSEGPIVPENSGHHSRHIHYVEPERCHNYDQYDTHNSDMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTKKKLSHMSLTPNTVMKDLISKWCRNNGVTLAEPQQRAKEFHSWEVSSTSIRSFGSSMNDLHLPLDLSSMSIGSLDYSQGSDSSHARVTNDLNLMSKKANDNSWSPQLNVHVHDTDLIILSKFHDLEWDSQCQAIKDLKDHLKCNCQASCSVSSEHFVELLNGFLSSAYEHQDVKALRTGTQLLMEFVNNCEKDLSYLKEDTFGMLASFLDLEVIGEALSIMEKLSANQHNKATIATSSVLTSILKILGSDSRESQEQAIRILHNLSLNSENCSHMVSLGCIPNLLPFFEDQSLLRYCIATLKNLCDIEVGRVSVVGTNGCLSRVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSALELLRLLGDVQYEEESMKPRIETQGSDDHSQEKKSSKTSGFLKKLSPFSKSKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0046 751 FunFam RING-type E3 ubiquitin transferase 272 346 - -
Lele54g0046 751 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Lele54g0046 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 347 IPR013083 -
Lele54g0046 751 MobiDBLite consensus disorder prediction 715 737 - -
Lele54g0046 751 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Lele54g0046 751 SUPERFAMILY ARM repeat 521 710 IPR016024 -
Lele54g0046 751 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Lele54g0046 751 CDD RING-Ubox_PUB 277 319 IPR045210 -
Lele54g0046 751 Gene3D - 460 723 IPR011989 -
Lele54g0046 751 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
Lele54g0046 751 SUPERFAMILY RING/U-box 264 347 - -
Lele54g0046 751 MobiDBLite consensus disorder prediction 715 751 - -
Lele54g0046 751 SMART arm_5 667 707 IPR000225 GO:0005515
Lele54g0046 751 SMART arm_5 544 584 IPR000225 GO:0005515
Lele54g0046 751 SMART arm_5 585 623 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0046 Lele-ChrLele54 400435 404068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0046 5 724 U-box Gene Family AT4G36550 35.859 5.64e-118 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0169 50 994012 995116 Lele54g0046 54 400435 404068 CCT
Lele49g0149 49 897070 899292 Lele54g0046 54 400435 404068 CCT
Lele54g0046 54 400435 404068 Lele54g0046 54 400435 404068 ECH
Lele53g0047 53 366582 371463 Lele54g0046 54 400435 404068 ECH
Lele54g0046 54 400435 404068 Lele55g1451 55 20707424 20710931 hybridization
Lele54g0046 54 400435 404068 Lele56g1383 56 16947839 16951443 hybridization