Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0044 ATGTCCGCGTGCAGTGAATCTCTGTTATGTTTAGCATTTGTATTTCTTATAATAACAGAGCAAGTGCTATGTCCTCAATCCCACAATAGAGAAGTATTCCAATTCTGTTTTTGTTGGTGCAGTTTTGTGTTGGAAGGGAAATTGATATACCGTGAAAGCATGTCATTGAAAAGCATTGTTCGTGAACTTAAGGAAATGAGAGATGGAATGAGCAACGTGTCAAAGCGAGGTGCAGAATGTAGGCAATGGCATAGTCGAAAAGCAAAATCACATATTGCTCCAGATGTCACCTTACCTCCAGTTGATTCCATTCAACAAGGACAGTGGGCAAATCTACCTCCAGAGCTACTTTTAGACATTATTCAGAGGGTGGAAGAGAGTGAGACAACATGGCCTGCACGGGTTGTCGTTGTTTCATGTGCTTCAGTATGTAAATCATGGAGAGACATTACAAAGGATATTGTCAAGACTCCTGAGCAATGTGGGAGACTCACATTTCCTGTCTCAGTGAATCAGCCGGGTCCTCGTGATGCACCAATACAGTGCTTTATCAGTAGGAACAGAGAAACTTCTACATACCACTTGTATTTTGGTCTTGTTCCATCGGAAAATGAGAGAGCCAAGTTGTTATTAGCTGCAAAGAAGATAAGAAAACCAACAGCCACAGAGTCCAATTTTTTGGGAACCAAGTTTGCCATATGTGATAGCCGACGTCCACAGAAAGCCAGCATTCAAGCGAATAATCATTCTAGTAGTAAATTCCACTCAAAGCAGGTATCTTCCAGAGTACCAGCACGTAAATATAATGTTGCCTCCATCACTTATGAAATAAATGTTCTTCGCACGAGAGGTCCGAGAAGAATGCACTGCATTTTGAACTCCATACCTATGTCGGCTATTCAGGAAGGAGGCAGTGCCCCAACTCCAACAACTCTTCCGCAATTTTCTTCCTCACCAGCAGTGAAAGGAAAATATTCAACTACAGATTTAAACTTCGCAAACTTACTAGATCCACTGGCATCGAGTCTGGGCTCAGTTGAGCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAACTGCAGTGTTGGTGCCTAAATTTCAAGGGTCGCGTCACGGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCTTCTCGTGATGTTCCTGCTGCAGAACAAGAGTTTGAACTCTTTGATGACTCACCGATGGAGGTAGAGCCCATTTCTCTGCGCAGCTGCTGCATTGAGCGTGTAACATTATGGGCTGGGCAGCATTTTGGTTTGGCCCTTCAAATAGGATGGATTTAG 1323 0.4346 MSACSESLLCLAFVFLIITEQVLCPQSHNREVFQFCFCWCSFVLEGKLIYRESMSLKSIVRELKEMRDGMSNVSKRGAECRQWHSRKAKSHIAPDVTLPPVDSIQQGQWANLPPELLLDIIQRVEESETTWPARVVVVSCASVCKSWRDITKDIVKTPEQCGRLTFPVSVNQPGPRDAPIQCFISRNRETSTYHLYFGLVPSENERAKLLLAAKKIRKPTATESNFLGTKFAICDSRRPQKASIQANNHSSSKFHSKQVSSRVPARKYNVASITYEINVLRTRGPRRMHCILNSIPMSAIQEGGSAPTPTTLPQFSSSPAVKGKYSTTDLNFANLLDPLASSLGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSRDVPAAEQEFELFDDSPMEVEPISLRSCCIERVTLWAGQHFGLALQIGWI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0044 440 PANTHER TUBBY-RELATED 70 386 - -
Lele54g0044 440 Gene3D - 102 155 - -
Lele54g0044 440 SUPERFAMILY Tubby C-terminal domain-like 158 391 IPR025659 -
Lele54g0044 440 PRINTS Tubby superfamily signature 369 385 IPR000007 -
Lele54g0044 440 PRINTS Tubby superfamily signature 218 242 IPR000007 -
Lele54g0044 440 PRINTS Tubby superfamily signature 351 368 IPR000007 -
Lele54g0044 440 PRINTS Tubby superfamily signature 267 294 IPR000007 -
Lele54g0044 440 SUPERFAMILY F-box domain 105 153 IPR036047 GO:0005515
Lele54g0044 440 Pfam F-box domain 109 156 IPR001810 GO:0005515
Lele54g0044 440 Pfam Tub family 223 386 IPR000007 -
Lele54g0044 440 Pfam Tub family 171 222 IPR000007 -
Lele54g0044 440 ProSitePatterns Tub family signature 1. 369 382 IPR018066 -
Lele54g0044 440 Gene3D Tubby Protein; Chain A 168 425 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0044 Lele-ChrLele54 393562 396117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0044 54 399 TUB Transcription Factor Family AT2G18280 55.978 5.22e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele54g0044 Tub 5.3e-46 CL0395