Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0020 ATGGGTCCGGGAAAGATTGAGATAAAGCTGATCCAGAACGCCACCAACAGGCAGGTCACCTACTCCAAGCGGCGCAATGGCATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCTGGCCTTACGTCCAATATAATAGATCAGTACCAGAGGACTTTTGGGAATATCGATCTCTGGAGTGCCCAGCATGAGAGGATGCTCCAAAACATGAAGAAGCTGAAAGAGATTAACAATAAACTCAGAAGACAGATAAGGCAGAGGATGGGTGAGGATTTAAATGATCTGGACTTCCAGCAAATGCGCAGTCTTGAGGAGGATATGGTTTCTGCCTCAGCGATCATACGTGAACGAAAGGTCAAAAGCATGGAGCAGATGAACGAGAATCTCCTGCTTGAACTTGTAAGAACTTGTTGTGAAAAGTGTGTGATCCATTCACAATATATGGTGCACGAGGAAGGAGATCAGGAATCAGCAGTTACGGTGGCAACCGGTGTCTCCAACTTCCATGGACTGTGCCACCAGCAGCACCCAACCCATATGAATCTTCACCATGATGGAATGGGATTGAGATCAGACGATCTGCGCCTTGCTTGA 657 0.4597 MGPGKIEIKLIQNATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGLTSNIIDQYQRTFGNIDLWSAQHERMLQNMKKLKEINNKLRRQIRQRMGEDLNDLDFQQMRSLEEDMVSASAIIRERKVKSMEQMNENLLLELVRTCCEKCVIHSQYMVHEEGDQESAVTVATGVSNFHGLCHQQHPTHMNLHHDGMGLRSDDLRLA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0020 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lele54g0020 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 - -
Lele54g0020 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 ProSiteProfiles K-box domain profile. 84 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele54g0020 218 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele54g0020 218 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lele54g0020 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 Pfam K-box region 82 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele54g0020 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele54g0020 218 Coils Coil 84 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0020 Lele-ChrLele54 228038 229463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0020 1 143 MADS-box Gene Family AT3G54340 57.639 3.81e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele54g0020 K-box 4.8e-12 No_clan