Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0007 ATGAGTGCTTTCAACGGCGATGAAACTGCTCCCTTTTTCGGCTTCCTGGGAGCAGCGGCTGCCCTCGTTTTCTCCTGTATGGGGGCCGCTTATGGCACTGCAAAAAGTGGTGTTGGAGTTGCCTCGATGGGCGTCATGAGGCCGGAACTTGTTATGAAATCCATAGTGCCCGTTGCCAAATCCTATTATCTCTTCGATGGATACGCCCACCTCTCTTCCGGTCTTGCTTGCGGTCTTGCTGGTCTTTCTGCTGGCATGGCCATTGGTATTGTAGGCGATGCTGGTGTTAGGGCGAATGCTCAACAGCCCAAGCTTTTTGTTGGAATGATTCTCATTCTCATATTTGCTGAGGCATTGGCATTATATGGTCTTATTGTTGGTATCATCCTCTCTTCCCGCGCTGGCCAATCGAGAGCTGAGTAA 423 0.5059 MSAFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0007 140 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 59 - -
Lele54g0007 140 SUPERFAMILY F1F0 ATP synthase subunit C 62 131 IPR035921 -
Lele54g0007 140 Gene3D - 60 137 IPR035921 -
Lele54g0007 140 Gene3D - 10 59 IPR035921 -
Lele54g0007 140 Pfam ATP synthase subunit C 72 130 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele54g0007 140 Pfam ATP synthase subunit C 16 59 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele54g0007 140 CDD ATP-synt_Vo_c_ATP6C_rpt2 64 131 - -
Lele54g0007 140 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 59 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0007 Lele-ChrLele54 146282 147612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0007 1 140 Primary Pumps ATPases(2) AT2G16510 84.146 1.50e-89 255
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele54g0007 54 146282 147612 CCT
Lele50g0114 50 684980 685644 Lele54g0007 54 146282 147612 CCT
Lele51g0108 51 622791 623456 Lele54g0007 54 146282 147612 CCT
Lele54g0007 54 146282 147612 Lele55g1485 55 20964075 20965488 hybridization
Lele54g0007 54 146282 147612 Lele56g1416 56 17203362 17204673 hybridization