Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0005 ATGGGGCGAGTGATTCGCGCTCAGCGTAAGGGTGCCGGTTCCGTCTTCAAGTCCCACACCCACCACCGCAAGGGCGCTGCTAGGTTCCGAAGCCTCGACTTTGGTGAGCGAAATGGTTATCTGAAAGCTACCCTTGTTGTCGGCAACGTCTTGCCCATCAGATCCATTCCTGAAGGAGCTGTTATATGCAACGTCGAGCACCATGTTGGTGACCGTGGTGTGTTCGCTAGGTGTTCTGGTGATTATGCTATTGTTGTTAGCCATAACCCCGATAACGATACATCTAGATTGGTTGGTAAGGCTTTGGATGGTGTTTTTCATAATAATTGCCTTCCTCCCACCATTTCATTCCTCATTTCTGCCCTTCACGATTGTTCGTTGGAAATTAATACCCTCTTGTCCACACAAATGTCAACTTTCCTCTACCCCTCAACCATCTGCTAG 444 0.4887 MGRVIRAQRKGAGSVFKSHTHHRKGAARFRSLDFGERNGYLKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVVSHNPDNDTSRLVGKALDGVFHNNCLPPTISFLISALHDCSLEINTLLSTQMSTFLYPSTIC 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0005 147 Pfam Ribosomal Proteins L2, C-terminal domain 47 97 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele54g0005 147 PANTHER RIBOSOMAL PROTEIN L2 42 98 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele54g0005 147 SUPERFAMILY Translation proteins SH3-like domain 48 98 IPR008991 -
Lele54g0005 147 Gene3D - 1 72 IPR012340 -
Lele54g0005 147 SMART Ribosomal_L2_C_2 45 121 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0005 Lele-ChrLele54 88730 90874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0005 1 97 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 60.811 2.43e-53 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0005 54 88730 90874 Lele54g0005 54 88730 90874 ECH
Lele54g0005 54 88730 90874 Lele55g1488 55 21025756 21027346 hybridization
Lele54g0005 54 88730 90874 Lele56g1418 56 17237833 17239444 hybridization