Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1443 ATGGCATCATCATTTCCGTCAAACCTTGCATCTTCCCCGGCAAGCCCCGACTGGATGAACAAAGCAGACAACGCATGGCAGCTCACAGCGGCAACACTGGTCGGGATTCAGAGCGTGCCTGGACTCATAATCTTGTACGGAGGAGCGGTGAAGAAGAAATGGGCAGTGAACTCAGCCTTCATGTCGCTCTATGCTTTTGCCTGTGTTTTCGTGTGTTGGGTGACATGGGGTTACAGATTGTCGTTTGGGGACAAGCTTGCTCCATTCTGGGGAAAGCCTGCTCTCTCACTGGACGAGGGTTACCTGTTCAAGCCTGCTTTTCTCGGCTTGTTCCCAAACGCCACGATGATTTATTTCCAGGGAGTATTTGCCTGCATCACATTGATTTTGATCGCTGGGGCGGTGTTGGGTCGCATGAACTTCTACGCGTGGATGCTGTTTGTGCCCCTTTGGCTCACATTCTCTTACACCTTCACAGCTTTCAGCATCTGGTGTCCTGACGGGTTTCTCTCCAAGATGGGCTTAATAGATTACTCTGGAGGATACGTCATTCATCTCTCTTCCGGGGTTGCTGGATTCACCGCAGCATACTGGGTTGGTCCGAGGCTGAACAAGGACAGAGAAAGGTTTCCTCCAAACAACATACTGCTGATGTTGGCCGGAGCAGGATTGTTGTGGATGGGATGGACGGGTTTCAACGGCGGAGACCCTTACTCGGTGAGCATGGACGCCTCCTTGGCTGTGTTGAACACCCATGCATGTACCGCCACCAGCTTGCTCACCTGGGTCGTCCTCGACGTCATCTTCTTCCGTAAGCCCTCTGTGATCGGCGCAGTTCAAGGCATGATCACTGGCTTGGTCTGCATCACTCCTGCTGCAGGTGTTGTGCAGGGATGGGCCGCCATATTCATGGGGTTATGCTCTGGATCCATTCCTTGGGTGACAATGATGGTCGTCCACAAGAGATCCAAGCTGCTTCAGAAGGTGGACGACACCATGGCTGTGTTTCACACTCACGCCGTCGCCGGATCTCTGGGAGGGATCCTCTCCGGCATCTTCGCCGAGCCCAAGCTCAACTTTCTGTTCTATGGCGCCTACAACAAATACGTCGGCCTCTTCTATGGTCTCCAGATGAAAGACCCCAGAACAGGGTTGCGACAGATCGGAGTCCAATTCCTGGGGATATTGTTTGTGACGCTGTTCAATGTGATTGCCACGAGTCTGATATGTCTGTTCATTCGACTGTTGATGCCTTTAAGGATGTCTGAAGAGGATATGGAGGTAGGGGACGAGGCTGCTCACGGGGAAGAAGCATACGCTATATGGGGACAAGGTGATAAGCTTGACACTTCGGTTTCCAAATATGCGAGTTCCCTGTATGACGATCTTGAGGCTGCAGAGGCAAGGAAGAAGCGTGCGGGACAAGTTGAGATGACATAA 1440 0.5229 MASSFPSNLASSPASPDWMNKADNAWQLTAATLVGIQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFVCWVTWGYRLSFGDKLAPFWGKPALSLDEGYLFKPAFLGLFPNATMIYFQGVFACITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWCPDGFLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVSMDASLAVLNTHACTATSLLTWVVLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIFMGLCSGSIPWVTMMVVHKRSKLLQKVDDTMAVFHTHAVAGSLGGILSGIFAEPKLNFLFYGAYNKYVGLFYGLQMKDPRTGLRQIGVQFLGILFVTLFNVIATSLICLFIRLLMPLRMSEEDMEVGDEAAHGEEAYAIWGQGDKLDTSVSKYASSLYDDLEAAEARKKRAGQVEMT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1443 479 Gene3D Ammonium transporter AmtB like domains 6 443 IPR029020 -
Lele53g1443 479 SUPERFAMILY Ammonium transporter 18 421 - -
Lele53g1443 479 FunFam Ammonium transporter 7 442 - -
Lele53g1443 479 TIGRFAM amt: ammonium transporter 23 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele53g1443 479 PANTHER AMMONIUM TRANSPORTER MEP2 7 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele53g1443 479 ProSitePatterns Ammonium transporters signature. 177 202 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele53g1443 479 PRINTS Rhesus blood group protein signature 216 234 IPR002229 GO:0005886
Lele53g1443 479 PRINTS Rhesus blood group protein signature 247 269 IPR002229 GO:0005886
Lele53g1443 479 PRINTS Rhesus blood group protein signature 120 136 IPR002229 GO:0005886
Lele53g1443 479 Pfam Ammonium Transporter Family 25 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1443 Lele-ChrLele53 22286164 22287703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1443 114 467 Inorganic Solute Cotransporters AT2G38290 60.734 1.45e-143 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1443 53 22286164 22287703 Lele55g0022 55 183842 185370 hybridization
Lele53g1443 53 22286164 22287703 Lele56g0021 56 605276 606778 hybridization