Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele53g1442 | ATGCATAGAAGGCACGCTTCAGAAGCACGTCTGGAAATCAGTGATCGCAATTTCCACGGGCCAATAACCCTTAAGCCCCTCTATTTCATCACTCCCCTTGTCTCTTCTGCGGTAATCGTCTCCAACATGGACGAGTCTAACAAGAAATCAGCTCCCAATTTTGACGCTGCTGTTGATGGAGTCTCACCATCCAAGTCTCCCATGATTGGAAAGAGAGAGGCTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGTCTGGGTTTCTGAAGATCAAGAAAAGGAAAGTAGCGCAGATGATTCCTTTCCAAATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATGATGATATAAAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGACGCTGATAACAAAGAACCTGCTCAGAAAATTGATTCAAGTAAAGCATCAGGTTTAGATTCTGACGGCAGAACTGATGTGGATATGGACAACGTAACCGCTTCATCGAAGAAGTTGCTTGCTACTTCTGCTGCAGGCGATAATATATCTACTGAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTAAGCCTTATGCTAGGCTTTTCTCTGATTGGTCTTGTCCCTTTGATTGACTTGTCGTATAATTCATATAATGGATGCTGGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTCGAGGTCTCTTTTGGTTTATATCGTGATGGGACGTTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCCTACAACGTCAGCTACCTCAAAAGAACAAAATGCCGTATGGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGGAAAATTTATTTAATGATTGTGGAGAAATTGTTGATGTTCGATTTGCAACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCACATGTTTCGTTTGCCACAGAAGAAGCAGCACAAATTGCTAAAATGGCAGCTGCTCCAAATGAACAAAATGCCACATCAAAAACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGTATGTACTATTCCAAATACAAGTGCTTGGCAGTTATTTCGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATCTGGCTGAAGAGAAGATTGTGCATTCTTCCAATAGCAGCATTCGTGGGAATTGGGACGAGCCTGGAAGTGTTGATTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAGCTAGCCTGAAAGAGCATTTCAGTTCTTGTGGAATAATTTTGAAGATATCGATTGCAAGAGATTATGGCACCGGTTCTACTAAGGGATATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCATTAAAGCACTTGAACTTGACGGAACTGAGGTTGGAGGTCATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCATAATATTCATGATGGTAGAGGTGGTGGCGATCAATTTGGTGGATGGCGTGGAGGTGGCCAATGGGATCGTAGAAGAGGTTATGGCAGGAGGTGGCATTGA | 1632 | 0.4185 | MHRRHASEARLEISDRNFHGPITLKPLYFITPLVSSAVIVSNMDESNKKSAPNFDAAVDGVSPSKSPMIGKREAEDEPEKQVTAKKQKRVWVSEDQEKESSADDSFPNSGNSDEDSGLNDDIKTESTILPEKLPDADNKEPAQKIDSSKASGLDSDGRTDVDMDNVTASSKKLLATSAAGDNISTEKVESSNDSSLDSGLDEDDVSLMLGFSLIGLVPLIDLSYNSYNGCWENLFKSCGEIVEVSFGLYRDGTFRGFAHVEFSTEEAAQNPTTSATSKEQNAVWKMLFVGNLSYSVERADLENLFNDCGEIVDVRFATDREGRFKGFAHVSFATEEAAQIAKMAAAPNEQNATSKTVFVGNLSYSVERADLYVLFQIQVLGSYFALKLNGNELLRQYIRLDLAEEKIVHSSNSSIRGNWDEPGSVDSQTVFVRGFDTSLREDEIRASLKEHFSSCGIILKISIARDYGTGSTKGYAWLDFMDVDGFIKALELDGTEVGGHVLSVEKRRPRHNIHDGRGGGDQFGGWRGGGQWDRRRGYGRRWH | 543 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele53g1442 | 543 | MobiDBLite | consensus disorder prediction | 45 | 163 | - | - | |
Lele53g1442 | 543 | MobiDBLite | consensus disorder prediction | 116 | 144 | - | - | |
Lele53g1442 | 543 | Gene3D | - | 230 | 284 | IPR012677 | - | |
Lele53g1442 | 543 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 285 | 405 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | SUPERFAMILY | RNA-binding domain, RBD | 232 | 270 | IPR035979 | GO:0003676 | |
Lele53g1442 | 543 | Gene3D | - | 409 | 542 | IPR012677 | - | |
Lele53g1442 | 543 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 430 | 502 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 287 | 342 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | MobiDBLite | consensus disorder prediction | 69 | 102 | - | - | |
Lele53g1442 | 543 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 277 | 341 | - | - | |
Lele53g1442 | 543 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 376 | IPR035979 | GO:0003676 | |
Lele53g1442 | 543 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 428 | 509 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | SUPERFAMILY | RNA-binding domain, RBD | 422 | 538 | IPR035979 | GO:0003676 | |
Lele53g1442 | 543 | SMART | rrm1_1 | 429 | 505 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | SMART | rrm1_1 | 286 | 360 | IPR000504 | GO:0003723 | |
Lele53g1442 | 543 | Gene3D | - | 285 | 351 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele53g1442 | Lele-ChrLele53 | 22274079 | 22283561 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele53g1442 | 214 | 491 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 23.232 | 5.00e-12 | 66.6 |