Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1442 ATGCATAGAAGGCACGCTTCAGAAGCACGTCTGGAAATCAGTGATCGCAATTTCCACGGGCCAATAACCCTTAAGCCCCTCTATTTCATCACTCCCCTTGTCTCTTCTGCGGTAATCGTCTCCAACATGGACGAGTCTAACAAGAAATCAGCTCCCAATTTTGACGCTGCTGTTGATGGAGTCTCACCATCCAAGTCTCCCATGATTGGAAAGAGAGAGGCTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGTCTGGGTTTCTGAAGATCAAGAAAAGGAAAGTAGCGCAGATGATTCCTTTCCAAATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATGATGATATAAAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGACGCTGATAACAAAGAACCTGCTCAGAAAATTGATTCAAGTAAAGCATCAGGTTTAGATTCTGACGGCAGAACTGATGTGGATATGGACAACGTAACCGCTTCATCGAAGAAGTTGCTTGCTACTTCTGCTGCAGGCGATAATATATCTACTGAGAAGGTTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTAAGCCTTATGCTAGGCTTTTCTCTGATTGGTCTTGTCCCTTTGATTGACTTGTCGTATAATTCATATAATGGATGCTGGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTCGAGGTCTCTTTTGGTTTATATCGTGATGGGACGTTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCCTACAACGTCAGCTACCTCAAAAGAACAAAATGCCGTATGGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGGAAAATTTATTTAATGATTGTGGAGAAATTGTTGATGTTCGATTTGCAACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCACATGTTTCGTTTGCCACAGAAGAAGCAGCACAAATTGCTAAAATGGCAGCTGCTCCAAATGAACAAAATGCCACATCAAAAACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGTATGTACTATTCCAAATACAAGTGCTTGGCAGTTATTTCGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATCTGGCTGAAGAGAAGATTGTGCATTCTTCCAATAGCAGCATTCGTGGGAATTGGGACGAGCCTGGAAGTGTTGATTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATAAGAGCTAGCCTGAAAGAGCATTTCAGTTCTTGTGGAATAATTTTGAAGATATCGATTGCAAGAGATTATGGCACCGGTTCTACTAAGGGATATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCATTAAAGCACTTGAACTTGACGGAACTGAGGTTGGAGGTCATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCATAATATTCATGATGGTAGAGGTGGTGGCGATCAATTTGGTGGATGGCGTGGAGGTGGCCAATGGGATCGTAGAAGAGGTTATGGCAGGAGGTGGCATTGA 1632 0.4185 MHRRHASEARLEISDRNFHGPITLKPLYFITPLVSSAVIVSNMDESNKKSAPNFDAAVDGVSPSKSPMIGKREAEDEPEKQVTAKKQKRVWVSEDQEKESSADDSFPNSGNSDEDSGLNDDIKTESTILPEKLPDADNKEPAQKIDSSKASGLDSDGRTDVDMDNVTASSKKLLATSAAGDNISTEKVESSNDSSLDSGLDEDDVSLMLGFSLIGLVPLIDLSYNSYNGCWENLFKSCGEIVEVSFGLYRDGTFRGFAHVEFSTEEAAQNPTTSATSKEQNAVWKMLFVGNLSYSVERADLENLFNDCGEIVDVRFATDREGRFKGFAHVSFATEEAAQIAKMAAAPNEQNATSKTVFVGNLSYSVERADLYVLFQIQVLGSYFALKLNGNELLRQYIRLDLAEEKIVHSSNSSIRGNWDEPGSVDSQTVFVRGFDTSLREDEIRASLKEHFSSCGIILKISIARDYGTGSTKGYAWLDFMDVDGFIKALELDGTEVGGHVLSVEKRRPRHNIHDGRGGGDQFGGWRGGGQWDRRRGYGRRWH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1442 543 MobiDBLite consensus disorder prediction 45 163 - -
Lele53g1442 543 MobiDBLite consensus disorder prediction 116 144 - -
Lele53g1442 543 Gene3D - 230 284 IPR012677 -
Lele53g1442 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 405 IPR000504 GO:0003723
Lele53g1442 543 SUPERFAMILY RNA-binding domain, RBD 232 270 IPR035979 GO:0003676
Lele53g1442 543 Gene3D - 409 542 IPR012677 -
Lele53g1442 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 502 IPR000504 GO:0003723
Lele53g1442 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 342 IPR000504 GO:0003723
Lele53g1442 543 MobiDBLite consensus disorder prediction 69 102 - -
Lele53g1442 543 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 277 341 - -
Lele53g1442 543 SUPERFAMILY RNA-binding domain, RBD 286 376 IPR035979 GO:0003676
Lele53g1442 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 509 IPR000504 GO:0003723
Lele53g1442 543 SUPERFAMILY RNA-binding domain, RBD 422 538 IPR035979 GO:0003676
Lele53g1442 543 SMART rrm1_1 429 505 IPR000504 GO:0003723
Lele53g1442 543 SMART rrm1_1 286 360 IPR000504 GO:0003723
Lele53g1442 543 Gene3D - 285 351 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1442 Lele-ChrLele53 22274079 22283561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1442 214 491 Eukaryotic Initiation Factors Gene Family AT2G36660 23.232 5.00e-12 66.6