Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1440 ATGTTCCTTTCCCAACCTGGGAATGGGATGATTGGTAATTTACTTCCAGCTACAGTTTGCAGCTTTGTAAAAGAGCATTATACTGTATTTTCTGTACCATGGGATTTGGTAAATGAAATCCAAGCTGTGGGTTTTCCTGTTCGTGAAATTAGACCTAAAATGGTTCGTGATCCCCTGAAAATTACTTCAACGTCAATTGTATTGCGGTCAGTGGACATGTATATAGATGTTCTTGAATACTGCTTGTCTGATTCTCTGCAAACAGATGATGCAACAATCCGTTCCAGACAAAATGATGTCAGAAGCCGTTCTCATCCATATCAAAATAGGGACCAGAAGATTATATCCATTGTTACAGAGCTCAAAGGTTTACCATGTCCTACTGCAACTAACCATCTAGTGAAATTGGGGTTTACTGAACTTTGGCTTGGGAATAAGGAGCAGCAATCGTTGATGGTTCCCTTGGGAGCAAAGTTTATGCATCCTAGAGTATTAGACAAACCAATATTGGGTGAACTTTTCTCTAATCTCGTGTTTCAGGCACTTCTGAAGTTACAGAATTTCTCTCTTCACCTTCTGGCCCATCATATGAAACTAATCTTCCACAAAGATTGGGTGACTCATGTAACAGGATCAAATATGGTCCCATGGCTTTCATGGGGGAAACTACCAACCGTCAGTTATCAGGGTCAAGTATCTGGTGGTAATACTGTTGAAGCTCAGTTAATTGAAGCCTACATTTCTGCTTTTGAAAGATCCAAAACTAGGCATCCTTGGTTATTTCCTTTTCTAAACCAGTGTAATATACCTATATTTGATGTACCATTCATGGACTGTGCTGCTTCGTGCAATTGTTTTCCTATGCCTGGTCAATCACTTGGCCAAGTTATTGCATTCAAACTTGTTGCAGCTAAGCAAGCTGGGTATCTCTCTGAACCTACTAATATTTCCACTTCCAGTTGTGATGATCTTTTTTCCCTTTTCTCTAATATAGTACACTTCGGCTTGCCTTGCTTTGACAGCAAACCTCAAAATGAGCAGGAGAACATATTGTTATATCTTTATACCAATTGGCATGATCTTCAAGCCGATCAGTCAGTAGTTGAAACTTCAATGGAAACTAAATTTGTGCGAAATTCAGATGAATTTTCAACAGATCTCTTAAAGCCCAAAGATCTTTTTGATCCTGGTTATGCTCTGTTGATCTCTATTTTCTCTCGTGAGAGAACAAAATTTCCCGGAGAAAGGTTTAGTACAGATGCGTGGCTTCGAATATTAAGGAAACTTGGCATCCGAACTGCTATTGAAGTAGATGTAATACTTGACTGTGCTAGAAGAGTTGAGTTCCTTGGAGGTGAGTGCATGAAATCTAATGATGTGGATGATTTTGAATCAGACAGGAGCAGCTCGAATAATGATGTTTCAGGGGAAGTTTGGATGCTGACAGGATCTGTTATTGAATTTATTTTCTCAAACTTCGCTCTTTATTTTAGCAACAACCTCTGTGACACTCTTGGCAGGATTGCATGTGTACCTGCTGAGTTGGGGTTTCCAAGTGTCCATTGCAAGAGGGTACTTGCTTCATACAGTGAAGCTATTTTGTCTAAGGATTGGCCTCTTGCTTGGAGTTGCGGTCCCATTCTCTCTAGACAGCAGATTGAATTTGGGGAAAATGGAGGTGAAGATACTCTAGCTCACTGGCCCATTGCTTCAGGAATGAACATTGAGGAATGTACTTGTCAGATCTTGAAATATCTAGACAAACTTTGGAGTTCCATTTCTGCCTCAGATTTAATGGAGCTGCAGAAAGTGGCATTTCTGCCTGTTGCAAATGGAACACGCCTGGTGACTGCTAGTGCTCTTTTTGTGCGTTTGATGATCAATTTATCTCCATTTGCTTTTGAGCTTCCTACAGTATATCTACCATTTGTGAAGATTCTAAAAGATTTGGGTCTTCAGGAGACACTGACCCTTTCTTCTGCAATGGATCTTCTCCTAAACCTTCAGAAAGCTTGTGGATATCAGCGTTTAAATCCAAATGAGCTACGGGCTGTGATGGAAATTTTGAATTTTATAAGTGATCAGATTATTGAGGGAAACACACTCGATAGGTCTAAATGGAAATCTGAAGCCATAGTTCCTGATGATGGCTGCACGCTTGTTCATTCCGCATCATGTGTCTATGTTGATTCCTATGGTTCTCGATATGTCAAGTGTATTGATAGTTCCAAAATAAGATTTGTCCACCCAGATCTCTCTGAGCTATGTAGTGTGCTGGGCATTAAAAAGTTGTCCGAAGTTGTTCTAGAGGAACTTGATGAGAATGAGCAGTTGCAGACTCTAGATTCTGTGGAATGCGTTTCACTAGTGACTGTCAAACAGAAGTTATCAAGTAGTTCGCTTCAGATTGCTGTATGGACCATTGTTAATAGCATGGGCAGTTACATTCCTGCAGTTAATAGCCTAGCTTTGGATACGATGCAATCCTTACTGAAGTCAACTGCAGAAAATCTGCAATTTGTTAAGAATCTTAAAACAAGGTTTTTGCTCTTGCCCATGTTAGTTGATATTACTCGTGTGGAACCACCAACTTATGTATCAATTTTTGATCTCATTGCCATTGTTGTTAGCCAGGCTTTAGGCTCTCCTACTGTATTGCCTATTGGACCTTTATTTGTTTGTCCTGAAGGATCTGAGATTTCAGTTGTTAATGTCTTAAATCTGTGCTTTGACAAGAAAGAAGTTGAATCCACAAGGGGAAGCAGTAATTTGGTAGGAAAAGAAATATTGCCTGAAGACGCTCGTCTTATTCAGCTCCATCCGTTGAGGCCTTTTTATTCAGGTGAAATAGTGGCTTCGCCTTCTCAAAATGGAGAAAAGCTAAAATATGGAAAAGTTCCTGAGGATGTCAGACCATCAGCAGGCAATGCTTTATACAGATTTAATATTGAAATTGCACCAGGTGTTACCCAAGTTTTACTTTCTTCTCAAGTTTTTTCATTTAAAAGTATAGCAGCAAGCAGTCCTCTGTCAGAAACCTTGGGGGGTGATAGCCTTGTATTAAGCAGTAACAAGCCTCATGTTGAGGTGTCAGAGAGTTCGGGAAGGGGCAGACGCAGTTCTCAGGCGATTGACGAGATACTGTCTGCTGCTGGAATCAATATTGATGCGGAGAAGCAGGCTTTGCTTCAGAGAACAATAGCTTTGCAAGAAAATCTCAAAGAATCTCAAGCAGCACTCCTACTGGAGCAGGAAAGTGTTGAAGCTGCAACAAAAGAGGCTGATACAGCAAAGGCGGCATGGGTTTGTCGGGTTTGTCTGGCTGCTGAAGTTGATATCACAATAGTGCCTTGCGGTCATGTGCTTTGTCATAGATGCTGTTCTGCAGTATCAAAGTGTCCATTTTGTAGGCTTCAGTTCTCAAAGGAAGGAGGTTTTGTAGTAGTCATTCTTCGTCAAAGGAGATAG 3468 0.406 MFLSQPGNGMIGNLLPATVCSFVKEHYTVFSVPWDLVNEIQAVGFPVREIRPKMVRDPLKITSTSIVLRSVDMYIDVLEYCLSDSLQTDDATIRSRQNDVRSRSHPYQNRDQKIISIVTELKGLPCPTATNHLVKLGFTELWLGNKEQQSLMVPLGAKFMHPRVLDKPILGELFSNLVFQALLKLQNFSLHLLAHHMKLIFHKDWVTHVTGSNMVPWLSWGKLPTVSYQGQVSGGNTVEAQLIEAYISAFERSKTRHPWLFPFLNQCNIPIFDVPFMDCAASCNCFPMPGQSLGQVIAFKLVAAKQAGYLSEPTNISTSSCDDLFSLFSNIVHFGLPCFDSKPQNEQENILLYLYTNWHDLQADQSVVETSMETKFVRNSDEFSTDLLKPKDLFDPGYALLISIFSRERTKFPGERFSTDAWLRILRKLGIRTAIEVDVILDCARRVEFLGGECMKSNDVDDFESDRSSSNNDVSGEVWMLTGSVIEFIFSNFALYFSNNLCDTLGRIACVPAELGFPSVHCKRVLASYSEAILSKDWPLAWSCGPILSRQQIEFGENGGEDTLAHWPIASGMNIEECTCQILKYLDKLWSSISASDLMELQKVAFLPVANGTRLVTASALFVRLMINLSPFAFELPTVYLPFVKILKDLGLQETLTLSSAMDLLLNLQKACGYQRLNPNELRAVMEILNFISDQIIEGNTLDRSKWKSEAIVPDDGCTLVHSASCVYVDSYGSRYVKCIDSSKIRFVHPDLSELCSVLGIKKLSEVVLEELDENEQLQTLDSVECVSLVTVKQKLSSSSLQIAVWTIVNSMGSYIPAVNSLALDTMQSLLKSTAENLQFVKNLKTRFLLLPMLVDITRVEPPTYVSIFDLIAIVVSQALGSPTVLPIGPLFVCPEGSEISVVNVLNLCFDKKEVESTRGSSNLVGKEILPEDARLIQLHPLRPFYSGEIVASPSQNGEKLKYGKVPEDVRPSAGNALYRFNIEIAPGVTQVLLSSQVFSFKSIAASSPLSETLGGDSLVLSSNKPHVEVSESSGRGRRSSQAIDEILSAAGINIDAEKQALLQRTIALQENLKESQAALLLEQESVEAATKEADTAKAAWVCRVCLAAEVDITIVPCGHVLCHRCCSAVSKCPFCRLQFSKEGGFVVVILRQRR 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1440 1155 SMART ring_2 1103 1136 IPR001841 -
Lele53g1440 1155 PANTHER SACSIN 332 1136 - -
Lele53g1440 1155 Pfam Zinc finger, C3HC4 type (RING finger) 1103 1140 - -
Lele53g1440 1155 ProSiteProfiles Zinc finger RING-type profile. 1103 1137 IPR001841 -
Lele53g1440 1155 SUPERFAMILY RING/U-box 1102 1142 - -
Lele53g1440 1155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1077 1144 IPR013083 -
Lele53g1440 1155 Coils Coil 761 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1440 Lele-ChrLele53 22261856 22268343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1440 1069 1138 C3H Transcription Factor Family AT1G73950 37.500 2.78e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1440 53 22261856 22268343 Lele55g0025 55 201932 222273 hybridization