Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1429 ATGGAGAATCACACCGCCAATAACACCAAAGCAGTTCCAGGAGGAGCCAAACCCATCAATGACAACGAAGAGCGTTCCAATTTGAATGAAACGGAGCACACAGAAGAAGTGGATGTAGATGAGAATGGAGGTGCGGATGAAGAAGATGGAGAAAGAACTGGATCTGGCTCCATCCAGTCTCCTCATGGCCCCCCTTCCAGAACCCCTTTCACTAATCTCAGTCAGCTCGATGCTGACCTCGCCCTTGCTCGAACCCTTCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAAGCTGGCTGCTATTTGCATGATGGGGATGATTTTGAAGATCTACATGATGGTACTGATGATGATGAAGACAATGGCCTTGTTGATGAAGATGACAATGAAGAAGAAGAAGAAGAAGATGCATTTGATGCCCACGCTCATGGTAGTTCTGGTGAAATTGATAGTACCAGCATTGAATTTGACCCTGATGTATTCTCAAGTGATGAAGCATATGCAAGAGCATTGCAAGAGGCTGAAGAGAGGGAAATGGCGGCTAGGCTATTCATTATGGCTGGGATAAACGATCGGGAAGCCGAGGACACAGAAGACCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTCCTGGCATTGGGCGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTATCGATACTATTGCCTCTTTGCCTTCAGTCAACTACAAGATGGGAAGTGATCAGCATGGAAGTAATGATTCGTGTGTCATTTGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTTCTTGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTGCTGAGGTGTCAGCTTCTGGTAGCAACTTGTAG 975 0.4574 MENHTANNTKAVPGGAKPINDNEERSNLNETEHTEEVDVDENGGADEEDGERTGSGSIQSPHGPPSRTPFTNLSQLDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGCYLHDGDDFEDLHDGTDDDEDNGLVDEDDNEEEEEEDAFDAHAHGSSGEIDSTSIEFDPDVFSSDEAYARALQEAEEREMAARLFIMAGINDREAEDTEDHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSIDTIASLPSVNYKMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSASGSNL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1429 324 MobiDBLite consensus disorder prediction 122 149 - -
Lele53g1429 324 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Lele53g1429 324 MobiDBLite consensus disorder prediction 1 72 - -
Lele53g1429 324 CDD RING-H2_PA-TM-RING 273 313 - -
Lele53g1429 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 320 IPR013083 -
Lele53g1429 324 FunFam E3 ubiquitin ligase BIG BROTHER-related 239 320 - -
Lele53g1429 324 MobiDBLite consensus disorder prediction 54 72 - -
Lele53g1429 324 Pfam Ring finger domain 271 313 IPR001841 -
Lele53g1429 324 SMART ring_2 273 313 IPR001841 -
Lele53g1429 324 MobiDBLite consensus disorder prediction 119 167 - -
Lele53g1429 324 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 26 322 IPR043312 -
Lele53g1429 324 SUPERFAMILY RING/U-box 264 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1429 Lele-ChrLele53 22193627 22197080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1429 56 217 C3H Transcription Factor Family AT3G19910 49.693 3.05e-37 131