Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1427 ATGTCTTCCTCCGGTGGAATCGATCATGATGGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCCGAGTCAATATTCCCGCCTCCGATTCTTCCGACCCTTTCTGTCCATTCTGCTTTCAAGGCTTTCTCGAAGAAGTCGAAAACCCTAACCCTAACCCTAACCCTTTTGCAGACCCAGAGCCCTCTTTTGGCTTTGATCCTCTATCCTTCCTTCCCCTTCTCTTGTCCACTGCTTCTCGCTCCAGGATTCGACCAGATTCCGTTGATGCTGACATATTCGACCCTGTTCATTTCCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGCGCGAACGTCCAATTCGAGATCAATCATCCTCATGAACAAGCGTTTCGGCTACCCACGAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAGCTCGCGGAGAACGACCCAAACCGTTATGGCACCCCGCCTGCCTCCAAATCTGCTGTCCAGAACCTTCCAACTGTTACTGTCACCGATGAATTGTTGAACTCGGAATTGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATGATTGCCTGCTTCCTTGGCTCGAACTGCATAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACTGATGACCCTGATTATGAGAACCCAGCCCACCGGGCCCATGGGAATGCTAATGCGGGGTGGAGGCCTGTTGGCAATGCCAGCAGCAGCGGAGGGGCTAACAGAGCCGTTCAGAGGACTTTTAGGATATCGTTGCGATATCCATTTGGTTCACGCGAGTCTACTCAAGAGAGTAGCGAACGAGGGTGGGGAAATATGCAAGAAGATTTGGATTGA 912 0.5055 MSSSGGIDHDGGTKPFFCYKCDRRVNIPASDSSDPFCPFCFQGFLEEVENPNPNPNPFADPEPSFGFDPLSFLPLLLSTASRSRIRPDSVDADIFDPVHFLQNHLRDLQADGANVQFEINHPHEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVQNLPTVTVTDELLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDPDYENPAHRAHGNANAGWRPVGNASSSGGANRAVQRTFRISLRYPFGSRESTQESSERGWGNMQEDLD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1427 303 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Lele53g1427 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 234 IPR013083 -
Lele53g1427 303 MobiDBLite consensus disorder prediction 244 267 - -
Lele53g1427 303 Pfam Ring finger domain 185 228 IPR001841 -
Lele53g1427 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 232 - -
Lele53g1427 303 SMART ring_2 187 227 IPR001841 -
Lele53g1427 303 MobiDBLite consensus disorder prediction 281 295 - -
Lele53g1427 303 SUPERFAMILY RING/U-box 166 237 - -
Lele53g1427 303 CDD RING-H2_RNF126_like 186 228 - -
Lele53g1427 303 MobiDBLite consensus disorder prediction 280 303 - -
Lele53g1427 303 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Lele53g1427 303 FunFam E3 ubiquitin-protein ligase RING1-like 148 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1427 Lele-ChrLele53 22189144 22190055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1427 131 239 C3H Transcription Factor Family AT5G01980 50.459 3.16e-33 125