Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1420 ATGGCCGAATCACCCTCTCCGACGCCCGAGCAACCCTTGCCGGAATCCGACGATTCCCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAAACGCATCCTGAGGGCCATGACATTCTCTGCCGCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCTTCGCCGTCTTTGGCTCCGCCCTCTACGACTTCTGATCTGATCGACGATCCTCATTTTGAATCGCAATTTCTCCGCGTACTTCGGCTACTTGCAGAGTCGGCGCGTGATGAAGACGCGCCTCCTCCTCCGTCTCGAAACCGCTCCTCAGGCGATGATTTTGTCAGGGTTGAGCTCGAGGATTGGGGTGACGATGAAGAAAGAAGCAACAACAATAACAACGACGAGGACGATGAAGATGTTGGGGTGGAGTTTCACGATGAAGGAGAAGAGCACGAAGGTGCTGAAGAGCATGAAGATGGACTAGGAATAGAGGACCTAAGTGGAGACGAAGCTGAAGAAGATCTGAGAAGGAGGAGTATGCGGAGCCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCCACTGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCGGATATACTGATGGGTCTTGAAGACAATTCCATTGAACTGAGACTTCAGGTGCCTGATTCTGATCGATTTTTCGGGAATCCGGGAGATTACGTCGATGCTGCTGATTATGAAGGTCTTCTGCTGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGGCCCGCCGGCGGCGAAATCTGCGGTGGAGTCGCTGCCGACGGTGGATATTGTGTCAGAGGATCAAGCTTTGGTGTGCGCTATATGCAAAGATATGTTGGGTGTTGGAAGCATGGCAAAGCGATTGCCCTGTGGACATCAGTACCACGGGGATTGCATAGTGCCCTGGTTGGGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCGACGGATGACCAGGATTATGAGGAGGAAAAGAAGGTGTTTCCCACTACTGCTAATGGGGCATCGGGTTCTGGTGGAGCCGATGCGGTATCGGGTTTATTCTAA 1086 0.5322 MAESPSPTPEQPLPESDDSQYWCYHCDKRVSVETHPEGHDILCRECKHGFVESIPSPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDEDAPPPPSRNRSSGDDFVRVELEDWGDDEERSNNNNNDEDDEDVGVEFHDEGEEHEGAEEHEDGLGIEDLSGDEAEEDLRRRSMRSRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEGLLLTLAESDGSGRRGGPPAAKSAVESLPTVDIVSEDQALVCAICKDMLGVGSMAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKVFPTTANGASGSGGADAVSGLF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1420 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 328 - -
Lele53g1420 361 MobiDBLite consensus disorder prediction 124 140 - -
Lele53g1420 361 Pfam Zinc finger, C3HC4 type (RING finger) 283 323 - -
Lele53g1420 361 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Lele53g1420 361 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Lele53g1420 361 MobiDBLite consensus disorder prediction 141 156 - -
Lele53g1420 361 SUPERFAMILY RING/U-box 278 330 - -
Lele53g1420 361 SMART ring_2 283 323 IPR001841 -
Lele53g1420 361 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Lele53g1420 361 MobiDBLite consensus disorder prediction 88 172 - -
Lele53g1420 361 MobiDBLite consensus disorder prediction 105 123 - -
Lele53g1420 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 330 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1420 Lele-ChrLele53 22145962 22147047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1420 194 339 C3H Transcription Factor Family AT5G01980 48.366 3.60e-36 135