Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1400 ATGTCCAAATCGGGGCTCCACAATTTTAATCCATCAATTCAACTTGGAGAGTTTGTTCTCTGGTTGGCGGTAAGTTCATCAGATGATGACCTGCAGTTGGAGGAACCGGAAACCTCTAATTATAGGAACCTCCCAGGATGGGCAGCTGGAGGAAGCTATGGTGGAGGGCTTAAGCAGTATAGTTCTTCTAAATGGAAAAATACTTCGAATGCAAGCTCTTCAAGAGCTTATAATCACTCTCAAGTCAAACACAGTACTAGCAACAATGTGCGGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCAGAGAATGGAAGAATAAATCAGCATCAGGCAGTCAGTTCGCGTAGTGCTAATACTGGTGCTGATTATGGTAAAAGGATCCTTCCATCATATCTTCAGTCATCTACTGAAAAGCAACTTCCATCTTCTCTCAAGTCATTTTCACCAGATACTAGGCTGAACAGTTTAAAAGATAGCATGAGCAGCAGAAGCCAGATTCATGATACCAATGGGAATCGTCATAATGGTGCGATTAGGATTCTTCCCCCAACTTTGATGCTTGGAAAAAACCTCACTGTTATGCAGTTACCTAGTTCGAGTGAATTTACATATCATTCTGGAGCAGGTGAAGAGAGGGCTTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGAGAAAGGTGGAAGCTACTTTACCTGATGGTTTATTGTCTGTATCACTTATGAGACATCAGAAAATTGCATTGGTTTGGATGCTTCAGAAGGAAAATAGAAGTTTGCATTGCTTGGGAGGGATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATATCGATGATTGCACTCATACAAATGCAGAGATCCTTGCAGTCAAAATCAAGAACAGATGAGATGTGCAATCATAAAGCTGAAGCATTAAATTTGGATAAGGATGATGAGAATGATAAGGGAAATGGTACTGTAGAACAATCTAAAAAGATCGAAGAAGTTGATGAAATAAAACCTTCTAAATCGGTTAGTTCGTCTTCAAAACAGGTGCTTGGTAGGAAAAGAGCAGCTGCTGGTAAACTGGTTGCCTGTTCTGCTAGTGTTCTACGACAGTGGGCAAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCCGTGTTGGTTTATCATGGGGGTCATGGGACAAAGGATCCTGTTGAACTTGCTAATTATGATGTTCTCACAACATATTCTATTGTGAGTACGGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGAAAAAAATGAGGAAAAATTTCTTTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGACTTATAATGCAATTAAAAAGAGTAAAAAGGGTAAAATGGGGATTGACAGTTCTGTTGATTGTGCTTCTGGCCCTCTTGCACAAGTGGGTTGGTTCAGGGTTGTTCTAGATGAAGCTCAAACCATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGGGCCAAAAGAAGGTGGTGTTTATCCAGCACACCGATTCAAAATACTATAGATGATTTGCATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATTCAAGTATTTCTACAATACAATAAAGTTTCGTAGCTATGTCTTGGCTGGCTATCACTATGTGTTTGGTGGTATCTCTGGTGGCCTTGGGGATCCTAGTTCTGCGAGTTATAATCATGTTGATTATTCAGTAGTACAGCAGAGAAATTACATTTCATCTAAAATCAAAGCAGTCCTTGAGGTTCTGCAGTTATATTGTAAAGTAAAGAATCCAGGTAATTGTGATGCTGATGTCATTGAAAGATCAAGGCGGGTGTTCTGCAACTCGACTTACAGTGGACGATCTAAAATATATTTTCATGTGGAGGAAACCCTAGCCTATAGTGTATGGTCTAGGGATGCAGCCTACAATTTGCTCTCTAAAGGATCGATCTTTCTGTCACATTTGGTAAATCATCAGTATTTGACAATTCTCTTTCTGGTTGACCAAGGAAAGAAAAAGTATTCAGATTTCATGGCTCAGCTAGAGTGTATATATATTAGTTCATCAGATGATGACTTGGAACTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCCCCTCGTGAAAGCAATGATGGTTATGGTGGAGGGCTTACACTTGATAGTTCTTTGAGATGGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACTATCTGAGCACTATACTGAACCTGGGTTCAGCAGTTATATGCCAAATCGCAGAGTCACACATGGAGATGGATCTTTCAATGTTTTGAAGAATGGAGACACAAGTCAGTTTCAGACAGTTAATTCTCGAATTGCGAAATCTTCTGGTGCTGATTATGAGAAAATACCATCCCAACAAGCTTTGAAGAGAACCCTTTCATTGTTGCCTCTGCCAGCTGCAACAAAGCCATTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACGGTGACCAGAGCACCTTGCGTGATAACTATGGCAGGGGCAATGATGAACATGCGATGTATCATAATGGTGGGATTAGGATTCTTCCTCCATCTGTGATTCATGGAAAGTCTATCTCTAACACACAGTTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGACAGGGGAAGAAAGGGCCTCGGAAAGTGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCCGAAGTTTGCATTGCTTGGGGGGAATTCTGGCCGATGATCAGGGGCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCGAAAGCAGATGAGATGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGAAGATGATGAAAATGATAATGCTGGTGATAATGCGGAAAAATCTAAAAACGATGAAGAAGATGATATAAAACCTATTCCTGAGTCAGTTAGTTCATCTTCAACAAAGGTTGTTGGCAGGAAAAGACCAGCTGCTGGTACACTGGTTGTGTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAATTGGATGATAAAGTAGGAGATATAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACATATTCTATTGTGACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGACGATGAAAATGATGAAAAAATGGGGGAAAAATTTGGGTTATCCTCTGAGTTTGTTTTTGGTAAAAAGAGGAAAAAGGCTCATAATGCAAGTAAAAAGAGTAAAAAAGGTAAAAAGGGAATTGACAGTTCTATTGATTGTGCATCTGGTCCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACCATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAACGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCGGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACATTGATTGATGGACAGCCCATAATCAATCTGCCCCCTAAGACTGTTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCATACGCTGCTGCTGGCACAGTAAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGCCAGGCCTGCGACCACCCACTTCTTGTTAAAGATTATAGTTCTGATTTCGTTGGGGAAAATTCAATAGAAATGGCAAGAACTCTTCCAAAGGAGATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAATGATACACCAGAAGACCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACAGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAAAGAACAAATTGGTGATGATGTTGTCTTTTCCAAAGCTACATTAAGAAGTTGCATGTCTGGTGATCTTGGTGATAGTAGTTCGTCAGATTCACGCCTTGTTGATTATTCAGTTGTGCAGCAGAGTAATTACAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTGCTCTGGTCATTCTAAAAACTCACTGCCTCCTGAAACTTCGGATATTGAAAACTTAGATTCAGATGTGACTGTTACAAGGGACACGAGAAAATATTCAGAGAGCACAACTAACTCACCATTAAAGGCTATCGTTTTTTCCCAGTGGACGAGCATGTTGGACTTGGTCGAAGATTCCCTGAAGGACTCTGGCATTCGACACAGGAGACTTGATGGTACCATGACGCTGGTTGCAAGGGATAAGTCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCCTGCTGATGTCACTAAAAGCAGGCAACCTTGGTTTGAACTTGGTTTCTGCTTGTCATGTAATTCTTTTAGATCTTTGGTGGAATCCAACAACTGAAGACCAAGCTGTGGATCGAGCTCACAGGATCGGACAGACGCGGCCTGTTACTGTGACACGGCTCACCATAAGAGATACAGTTGAAGACAGAATCTTGGCTCTCCAGGAAGACAAGAGAAAAATGGTCGCATCTGCTTTTGGTGAAGATCAAGCCGGCGGGATGGCGACTCGCCTAACAGTGGATGACCTAAAATATCTGTTCATGGTCTGA 5073 0.4086 MSKSGLHNFNPSIQLGEFVLWLAVSSSDDDLQLEEPETSNYRNLPGWAAGGSYGGGLKQYSSSKWKNTSNASSSRAYNHSQVKHSTSNNVRNHRVAQRDESFNFSENGRINQHQAVSSRSANTGADYGKRILPSYLQSSTEKQLPSSLKSFSPDTRLNSLKDSMSSRSQIHDTNGNRHNGAIRILPPTLMLGKNLTVMQLPSSSEFTYHSGAGEERASETDERLIYQAALERKVEATLPDGLLSVSLMRHQKIALVWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSRTDEMCNHKAEALNLDKDDENDKGNGTVEQSKKIEEVDEIKPSKSVSSSSKQVLGRKRAAAGKLVACSASVLRQWARELEDKVGDEAKLSVLVYHGGHGTKDPVELANYDVLTTYSIVSTEVPKQPLVEEDEIDEKNEEKFLLSSEFAFGKKRKKTYNAIKKSKKGKMGIDSSVDCASGPLAQVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSSTPIQNTIDDLHSYFRFLKYDPYAEFKYFYNTIKFRSYVLAGYHYVFGGISGGLGDPSSASYNHVDYSVVQQRNYISSKIKAVLEVLQLYCKVKNPGNCDADVIERSRRVFCNSTYSGRSKIYFHVEETLAYSVWSRDAAYNLLSKGSIFLSHLVNHQYLTILFLVDQGKKKYSDFMAQLECIYISSSDDDLELEEIENPNYGNRSGWPPRESNDGYGGGLTLDSSLRWANTSNASSSGAYNHSLSEHYTEPGFSSYMPNRRVTHGDGSFNVLKNGDTSQFQTVNSRIAKSSGADYEKIPSQQALKRTLSLLPLPAATKPFPSSLQSFAPGSSMNGDQSTLRDNYGRGNDEHAMYHNGGIRILPPSVIHGKSISNTQLASSSEAVYRSGTGEERASESDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMCNHKAEALNLDEDDENDNAGDNAEKSKNDEEDDIKPIPESVSSSSTKVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDIAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEDDENDEKMGEKFGLSSEFVFGKKRKKAHNASKKSKKGKKGIDSSIDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKTVQLNKVDFSIEERAFYTKLEADSRNQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMARTLPKEMLVNLFNCLEASFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVVFSKATLRSCMSGDLGDSSSSDSRLVDYSVVQQSNYSSSKIKALLEILELHCSGHSKNSLPPETSDIENLDSDVTVTRDTRKYSESTTNSPLKAIVFSQWTSMLDLVEDSLKDSGIRHRRLDGTMTLVARDKSVKDFNTDPEVTVLLMSLKAGNLGLNLVSACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGMATRLTVDDLKYLFMV 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1400 1690 Pfam SNF2-related domain 258 554 IPR000330 GO:0005524|GO:0140658
Lele53g1400 1690 SMART helicmild6 1549 1632 IPR001650 -
Lele53g1400 1690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1390 1446 IPR013083 -
Lele53g1400 1690 SUPERFAMILY RING/U-box 1393 1433 - -
Lele53g1400 1690 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 813 1689 - -
Lele53g1400 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1288 1689 IPR027417 -
Lele53g1400 1690 CDD DEXDc_SHPRH-like 948 1280 - -
Lele53g1400 1690 CDD SF2_C_SNF 1537 1642 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 1025 1042 - -
Lele53g1400 1690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 963 1242 IPR014001 -
Lele53g1400 1690 Pfam Zinc finger, C3HC4 type (RING finger) 1396 1432 - -
Lele53g1400 1690 SMART ring_2 1396 1434 IPR001841 -
Lele53g1400 1690 ProSitePatterns Zinc finger RING-type signature. 1411 1420 IPR017907 -
Lele53g1400 1690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1519 1685 IPR001650 -
Lele53g1400 1690 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1161 1292 - -
Lele53g1400 1690 SMART ultradead3 243 555 IPR014001 -
Lele53g1400 1690 SMART ultradead3 944 1259 IPR014001 -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 60 92 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 1012 1054 - -
Lele53g1400 1690 Gene3D - 1045 1133 IPR038718 -
Lele53g1400 1690 ProSiteProfiles Zinc finger RING-type profile. 1396 1432 IPR001841 -
Lele53g1400 1690 Gene3D - 1148 1292 IPR038718 -
Lele53g1400 1690 Gene3D - 344 558 IPR038718 -
Lele53g1400 1690 Gene3D - 217 307 IPR038718 -
Lele53g1400 1690 Gene3D - 1295 1689 IPR027417 -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 315 351 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 315 341 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 138 176 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 138 181 - -
Lele53g1400 1690 CDD DEXDc_SHPRH-like 247 548 - -
Lele53g1400 1690 Gene3D - 917 1010 IPR038718 -
Lele53g1400 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1280 IPR027417 -
Lele53g1400 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 553 IPR027417 -
Lele53g1400 1690 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1043 1132 - -
Lele53g1400 1690 Pfam Helicase conserved C-terminal domain 1533 1632 IPR001650 -
Lele53g1400 1690 Pfam SNF2-related domain 955 1357 IPR000330 GO:0005524|GO:0140658
Lele53g1400 1690 MobiDBLite consensus disorder prediction 101 124 - -
Lele53g1400 1690 MobiDBLite consensus disorder prediction 60 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1400 Lele-ChrLele53 22051242 22065483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1400 167 595 RAD5 or RAD16-like Gene Family AT1G50410 54.130 8.64e-132 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele53g1400 SNF2_N 2.9e-68 CL0023