Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1398 ATGGCGGCTGGAAAATCAACCAGGTCGAACCCCTCACAGGCTAGAAAGGGAGTTGATGCAGTCGATTCTCGGCCTGCTACTGGTCTTGTTCGTGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCAGTGGCCCTCATCAGCATGCACAGTTAGGCTCAGGTTGTGGACAAGCCTGCTGAAGTCAAGAAACCAGTGGAGAGCAAGAAGCCTAAGGCAAAGAAGGCCAAGGTGGAGAAGGCGGAGAAGGGGAAGAAGGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCTACAGCTTTCTTTGTCTTCCTGGAAGAATTTAGAAAATCTTTCAAGGAGGCAAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAGGGGGCAGGTGAGAAGTGGAAGTCCTTATCTGATGAGGAGAAGAAGCCTTACCTGGATAGAGCTGCTGAACTCAAGGCAGAATACGAGAAAGCATTGGATAAATATAATGCTGCGGAAGACGGATCTGATCAAGAGGGATCTGATAAGGAAGATGCCGCTGAGGAAGTGGGTCACGAGGAGTCTGAGAAGGACGACTCGATAAAGGAAAATGAAGAGCTCACTGATGAGTAG 627 0.4864 MAAGKSTRSNPSQARKGVDAVDSRPATGLVRAKDGSAFAKCEECNKNVPVALISMHSXAQVVDKPAEVKKPVESKKPKAKKAKVEKAEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKGAGEKWKSLSDEEKKPYLDRAAELKAEYEKALDKYNAAEDGSDQEGSDKEDAAEEVGHEESEKDDSIKENEELTDE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1398 208 Gene3D High mobility group box domain 82 183 IPR036910 -
Lele53g1398 208 MobiDBLite consensus disorder prediction 120 175 - -
Lele53g1398 208 MobiDBLite consensus disorder prediction 57 106 - -
Lele53g1398 208 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 189 - -
Lele53g1398 208 CDD HMGB-UBF_HMG-box 99 165 - -
Lele53g1398 208 MobiDBLite consensus disorder prediction 120 208 - -
Lele53g1398 208 MobiDBLite consensus disorder prediction 1 32 - -
Lele53g1398 208 SUPERFAMILY HMG-box 90 169 IPR036910 -
Lele53g1398 208 Coils Coil 150 173 - -
Lele53g1398 208 SMART hmgende2 98 169 IPR009071 -
Lele53g1398 208 Pfam HMG (high mobility group) box 99 168 IPR009071 -
Lele53g1398 208 MobiDBLite consensus disorder prediction 1 16 - -
Lele53g1398 208 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 99 168 IPR009071 -
Lele53g1398 208 MobiDBLite consensus disorder prediction 66 99 - -
Lele53g1398 208 MobiDBLite consensus disorder prediction 183 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1398 Lele-ChrLele53 22042964 22044645 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele53g1398 HMG_box 9.6e-22 CL0114