Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1393 ATGCTAGACAATAGTGCCAACTCTTCTGATGCCGCTTCCTCAGAAAATAAAGGAGTGATCCTTCCCAGAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCTGAGGTGGTGTGTTTGTCACCCAAGACTCTGTTGGAATCAGATAGATATGTGTGTGAGATCTGTAATCAAGGATTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGGCACAAGGTACCTTGGAAATTGCTGAAAAGGGAGATTAGCAGTACGCAAGAGGTGAAGAAGAAGGTGTTCGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATTAAGAAACATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGAAGCGTGCACTGTTCGAACGGCTTCAAGCCCAAGTCCATCTAGTGAGGCCAATTTAGTTCCATTAATGCAAGGCTTGTCAGTGCCAAAACCACCTGCATTGTTAACCTCGGACTTACAAAACAATAAGGCTCCCTACACCACTTATCAGAGACATAATAATCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGAAGCTCGACGGAATCGAGGTTCTGATAATCATGAGGAGCATAACAACTACGAGACCGATCAAACCCACCTGAAGCTTTCAATAGGGTCATGCAGTAACAATAATAAGACCAACAAGAAGGTTGGGAAAGAAGCAGAAGCAGGAGCACCGAGGCTAAGGGAAGTGGGGTGGTTGAAAGAGTGTGCGAGTGAAGAGCTCAAGTTGGCGATGTCTGAGAAGGCTTATGCAGAAGAGGCCAGAAGAGAAGCTAAGCGTGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCGAAGAGGATAAGGAAGGAAGCACAGGAGGAGCTAGAGAAAGCTGAGGCATTGAAGAAGCAGGCCATGATGAAGACGAGTTCCACTCTGCTGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTGCTGTGGTTTCATCAGAAGAGACATCTCTTGTTATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATAA 1239 0.4576 MLDNSANSSDAASSENKGVILPRRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKREISSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQEACTVRTASSPSPSSEANLVPLMQGLSVPKPPALLTSDLQNNKAPYTTYQRHNNLEELQLLRCSSSSEARRNRGSDNHEEHNNYETDQTHLKLSIGSCSNNNKTNKKVGKEAEAGAPRLREVGWLKECASEELKLAMSEKAYAEEARREAKREIEMAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKTSSTLLQITCQACKQQFQSSIAVVSSEETSLVMSCMSSPTTEGEGDQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1393 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Lele53g1393 412 SMART c2h2final6 52 74 IPR013087 -
Lele53g1393 412 SMART c2h2final6 96 126 IPR013087 -
Lele53g1393 412 SMART c2h2final6 132 159 IPR013087 -
Lele53g1393 412 Gene3D Classic Zinc Finger 117 194 - -
Lele53g1393 412 Coils Coil 310 365 - -
Lele53g1393 412 MobiDBLite consensus disorder prediction 265 282 - -
Lele53g1393 412 MobiDBLite consensus disorder prediction 1 15 - -
Lele53g1393 412 FunFam protein indeterminate-domain 12-like 31 102 - -
Lele53g1393 412 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lele53g1393 412 MobiDBLite consensus disorder prediction 246 264 - -
Lele53g1393 412 Gene3D Classic Zinc Finger 30 100 - -
Lele53g1393 412 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 379 IPR031140 -
Lele53g1393 412 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Lele53g1393 412 MobiDBLite consensus disorder prediction 243 289 - -
Lele53g1393 412 Pfam Zinc-finger of C2H2 type 52 70 - -
Lele53g1393 412 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1393 Lele-ChrLele53 22011437 22013687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1393 23 409 C2H2 Transcription Factor Family AT2G01940 54.893 1.38e-142 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g1393 None None None