Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1380 ATGTCGACCTTGACCACTCCTCCTCCAGACACATTTTCGGCTCGTGATGATGTTGCTCGCCTCCACAAAGCTCTGAAAAAAGGAATCCGCTGCAAAACTTCAGTAGTTATAGAAATCCTTGCTCATAGAGACTCAGCGCAAAGAGACCTCATTCTACAGGAATATGAAACTGCACATTCTGAACGCCTTACCAAAAGTATCAGTTCAGAGCTTCATGGGAATATCAAGAAAGCACTGCTTCTTTGGATGGATGAACCTGCCAACAGGGATGCCACCGTGGCAAGGCAAGCCTTGACTTCATCTCTTGTTGATAATCAAGCCATAACCGAAGTGATATGTTCTCGCTCCCCATCACAAATAAGGCGCTTTAAAGAAGTTTATCAGAAAGTATACCATAAAAGTTTAGAGAGGGACATTGAAGACTACCTATCCGGGGATCTCAAGAAGATAGTGGAGAAGGACGCAATGGATCTGTATAAAGCGGGGCAAGGGAAGATGCTGGGAACGGATGAGAGGACTTTCATAAGGATTTTCAGTGACAGGAGCAGGACGCATTTGGCCGCTATTGCCAAAGCATATGAAATAAACAATGGCAAATCACTAGAAAAGGCTATAAAGAAAGAAGCACATGGCTTTTTTGAAAGGGGCCTCCTGGCCATTCTTCGATGTGCTACTAACCCCGCACTGTACTTCGCCAAGATTCTGAGGAAATCAATGAAGGGTTTTGGAACTGATGATAGTAGATTAATAAGAGTAATTGTGACAAGAACTGAGGTTGATATGTGCCAGATAAAAGAAGCCTACCTGCAAAAATATGGGAAGGCATTAGCCAGTACGGTTCGATCGGACACATCAGGCCATTATAAGGACTTCCTTCTAGCTCTAATAGGGAAAGAAGATATTCGAGGCCCAGATTCTTCTTCACAGAAAGGAAAGGATCTGATAATTGAGGGGTACCCTATTCAGGGTCTGTCCGTTGGAGGCCAAGAAACCTGCATAATTTTCCCCTCGCTTAAGTTAGCTTTTGATATTGGTCGCTGCCCTCCCCGCGCTGTTTGCCAAGACTTCCTCCTTATTTCGCATTCCCACATGGATCACATTGGAGGACTGCCTATGTATGTTGCAACTAGAGGCTTGTACCGTATGAAGCCCCCAACAATTATCGTACCAGTATCCATAAAAGAGGATGTAGAGAGGCTCTTTGAGGTGCATAGGAAATTGGACCACTCGGAACTGAAGCACAATCTGGTTGGCTTGGATGTTGGAGAAGAGTTTTATTTGAGAAACGATATTAAAGTAAAAGCTTTTAATACTTACCATGTGATACCTAGCCAGGGCTATATAATTTACTCTGTAAAGAAGAAGCTTAAACACGAGTACCTTGGCCTTCCTGGAAATGAAATTAAGAAGTTGAAGTTTTCAGGTGTGGAGATAACATACACTTTGGAAGAACCAGAGATTGCTTTCACTGGCGACACTATGGCAGATTTCATAGTTGATGATAGTAACATAGATGCATTGCGAGCCAGGATTCTTGTTATGGAGTGCACCTTTTTGAACGATTCAATTACAGTGACGCATGCCAGGGATTATGGACACACTCATCTGTCTGAGATAATTAGTCATGCTGGGAAGTTGCAAAACCGAGCAATCCTTCTAATTCACTTTTCAGCGCGCTACACAGAAGAGGAAATTCAAGAAGCCATAGCTGCGTTGCCTCCACCATTAGCGGGTCGAACTTATGCACTTACAGAAGGCTCACCCAAGACCTTACAGTTTCGATTGCTATCAAATCAATTCATTTGTCCTCTCTTGGGTCAGCTGCATAAGATAATGGATAATGTGGTTGGAGTACGAGTGAATGGAACCTTTAATCCTGTTGATTTTGACTATAATTTGAATTATGAAGTATGCTGGGATTCTTCTAGGACCTTCGGTTATTGGGCACGACAAGGAACTCAGGAATCTACTTTTCCCTCCTATCCAAAACGAGGTCTTGCGGTTCATGGCATCAATGTCTTCCTCATGTTACGTCTTTATCGTGGTAATGAAAATGGAGGCGGTTTCGAACCTGAAAAACGCCATAAAAACCTGGAAATTCGGAACAATACCCTTCCTGTGCAGTTTCTGGGTGATGTCGGGCCTCTTCTTCCTCCTCGTCCCCGATGCCAGATTGCAATATCAGCAACCGTCGTCAACGAGATTGCTCATTGGGTTTTTATAGGTTTCTCCTCAGTCATGAACCTCAAGTTGCAGAACACAGTAGGGCTCTTGTGTTCTTGCATTGCCTATATATGTTTCTGCGTTTTCGTGATAAAGCCAGCAATGTTGATGTTTTCCAGGAGGACCCCTGATGGAATGCCATTAAGTCAGGGTTATGTTGTCATGATACAAATCGGGATAGTGGACGATCAACTTTTCACTCCCTGGGTGTTCTATGTGATAGGGGTCACTGGAATTGTGTCACCATTGCTTGAAATCCTATATAAACCACTAACTAGGCTACAAACATTCTCCAGATCATGTAATAAAAAGGAAAGTGAGAGAAACAAAGGAATAGAAAAAGAGCTTGTACGATACGTTATAGGAACGTATAGAGAAACCAAACTTGGACAAAATTCCTTGGGGGATAGTGACTGCCCCATGAAGCGCCTATCATATGAAAGGAATCCAAGTTTTCGTATTTAA 2688 0.4304 MSTLTTPPPDTFSARDDVARLHKALKKGIRCKTSVVIEILAHRDSAQRDLILQEYETAHSERLTKSISSELHGNIKKALLLWMDEPANRDATVARQALTSSLVDNQAITEVICSRSPSQIRRFKEVYQKVYHKSLERDIEDYLSGDLKKIVEKDAMDLYKAGQGKMLGTDERTFIRIFSDRSRTHLAAIAKAYEINNGKSLEKAIKKEAHGFFERGLLAILRCATNPALYFAKILRKSMKGFGTDDSRLIRVIVTRTEVDMCQIKEAYLQKYGKALASTVRSDTSGHYKDFLLALIGKEDIRGPDSSSQKGKDLIIEGYPIQGLSVGGQETCIIFPSLKLAFDIGRCPPRAVCQDFLLISHSHMDHIGGLPMYVATRGLYRMKPPTIIVPVSIKEDVERLFEVHRKLDHSELKHNLVGLDVGEEFYLRNDIKVKAFNTYHVIPSQGYIIYSVKKKLKHEYLGLPGNEIKKLKFSGVEITYTLEEPEIAFTGDTMADFIVDDSNIDALRARILVMECTFLNDSITVTHARDYGHTHLSEIISHAGKLQNRAILLIHFSARYTEEEIQEAIAALPPPLAGRTYALTEGSPKTLQFRLLSNQFICPLLGQLHKIMDNVVGVRVNGTFNPVDFDYNLNYEVCWDSSRTFGYWARQGTQESTFPSYPKRGLAVHGINVFLMLRLYRGNENGGGFEPEKRHKNLEIRNNTLPVQFLGDVGPLLPPRPRCQIAISATVVNEIAHWVFIGFSSVMNLKLQNTVGLLCSCIAYICFCVFVIKPAMLMFSRRTPDGMPLSQGYVVMIQIGIVDDQLFTPWVFYVIGVTGIVSPLLEILYKPLTRLQTFSRSCNKKESERNKGIEKELVRYVIGTYRETKLGQNSLGDSDCPMKRLSYERNPSFRI 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1380 895 ProSitePatterns Annexin repeat signature. 243 295 IPR018252 GO:0005509|GO:0005544
Lele53g1380 895 Gene3D - 320 575 IPR036866 -
Lele53g1380 895 CDD RNaseZ_MBL-fold 314 516 - -
Lele53g1380 895 FunFam Annexin 148 226 - -
Lele53g1380 895 FunFam Annexin 227 298 - -
Lele53g1380 895 PRINTS Annexin family signature 67 83 IPR001464 GO:0005509|GO:0005544
Lele53g1380 895 PRINTS Annexin family signature 239 259 IPR001464 GO:0005509|GO:0005544
Lele53g1380 895 PRINTS Annexin family signature 27 49 IPR001464 GO:0005509|GO:0005544
Lele53g1380 895 PRINTS Annexin family signature 283 296 IPR001464 GO:0005509|GO:0005544
Lele53g1380 895 SMART annex3 168 220 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 SMART annex3 243 295 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 SMART annex3 103 154 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 SMART annex3 30 82 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 ProSiteProfiles Annexin repeat profile. 85 148 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 PANTHER TRNASE Z TRZ1 305 586 - -
Lele53g1380 895 Gene3D Annexin 2 84 IPR037104 GO:0005509|GO:0005544
Lele53g1380 895 Gene3D Annexin 227 298 IPR037104 GO:0005509|GO:0005544
Lele53g1380 895 ProSiteProfiles Annexin repeat profile. 226 297 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 SUPERFAMILY Annexin 5 300 IPR037104 GO:0005509|GO:0005544
Lele53g1380 895 Gene3D Annexin 85 150 IPR037104 GO:0005509|GO:0005544
Lele53g1380 895 ProSiteProfiles Annexin repeat profile. 149 222 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 Pfam Annexin 154 220 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 Pfam Annexin 230 295 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 Pfam Annexin 89 150 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 Pfam Annexin 17 81 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 Gene3D Annexin 151 226 IPR037104 GO:0005509|GO:0005544
Lele53g1380 895 ProSiteProfiles Annexin repeat profile. 12 84 IPR018502 GO:0005509|GO:0005544
Lele53g1380 895 SUPERFAMILY Metallo-hydrolase/oxidoreductase 336 574 IPR036866 -
Lele53g1380 895 Pfam Beta-lactamase superfamily domain 355 556 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1380 Lele-ChrLele53 21933819 21942869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1380 724 817 Antiporter Super Family AT4G23700 27.619 2.51e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1380 53 21933819 21942869 Lele55g0093 55 587253 595337 hybridization