Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1371 ATGACACTTCCACCTGCATGGATCCTTGTGTATAATGCATTACAAATGGAACTTGCAAGGAATCATATGCTTCTTTGGTTTTTCATTTTGAATGTGATTGGGGATGAAAGATCATTGAAATACCACATCGAATTGGAGGCTTGTTCATATTCAATAGGTCGCAAAGTTGCATTCATGATTTGTATGATAGAAAAGCTCACAATATACAATATAATTCATCTAAACATGATGACACCAAATTTGAACTTGGAACCTGAAAATCATTCCGAAGTCAGTAGCCAAGTAGCTTCCAATATATCCTTGCAAGAAACGTCCCATGATCTTACCAAGGACAGTAACACCACTTCTTCCTGTTTCACAAATCTCACAAAACCTGAAACGGATCCCATGTCTTTTTCCCTCGACTTGACGCTCAACTTCAACTCTGGCGATGGTGAGTTGAAGCGCATGAGTGATGCCAGCAGTGAAGTGGGAGCTGAAACACAACCTTCAGGATCAGCAGTTCCCAGGGTTTTCTCTTCTCATTCCGCGATGCACCAAAGACACATGCCGTCATTGAGGGCTCCCAACTTAAGAGCTGGTGCAAAATTCGAGAAAGATTATTTTGGATCACCAGTGTTCATGGAAGATGATGATAATATGGGTCCATTTTGGCCTGGGAGTTTCTGGCAGGTGGAAGGAAGAGCCGGTGTCGTTTTTGACAGAATGTTCCAAGTTGATGTTATGGAGTTTGTGGAAATTCCTGTGAGGGATGTCAACCTTGTTAAAAGTCGTCCAACCTTATTTACTATATGACCAGAGCTATGGCGTTTTGAGGAATCGATCCTCCAGAGCCCCAAAAAAGGGAAAATTCCCACCCACTGTCCCAGATTCTCCGTTCATTTTCCGAATTATCCTTTGGTTCTCTCTCCCCCCTGTTCTGTCTACCTGTCTGTCTGGGGTAAGCCTCTCTCTCCCCCCTCTCTCTATCTCTGGTTGGTTGCTTCAGCCATGATTGGAGGGAAAGATCTTCCTAATGGTCTTGACTCCGATGGGGAGAACTCTCGGAGCAAGCTGTCAAAGCCCAACTTTACCCGTGGCAAGGAGAACCTTGAACAGAAATTAGGTTATCCAGTAAAGGGTGCGTATTTTCTGAAGGATTCAGAGGAAGGTGGTGATGGACTTCTATTGAAACCCTCTAAAGTTGGGACTTCGGGCTTACAAGAGCTGACCCTCAGCTACCTTTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTGGAAAAAGTCAGGTGCAAAGGTAAAGAAGTTCTCATCTCGGAGGATTCAAATCAGGATGAGAAGTGGGTGGAACGGGATTTTCTGAATTTGAGCGAAACCAGGGAGAATTCTTCAAAGCGATCGGTTGAAGAAGAGGTTGAAAGGGAAAATAAGGACAAGAAGCCGAAGCTGGAGACGCTTAATCTCTCTCTTGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCCAACGCCCTACAAAACGGTGATCAGCCGCTGAGGCCAAAGCCTAGCAAACCGTCGGCGACTACGTATTCAAATGATTATACGGCGGCTTCTCTGTCATACTCGTACTCCCATCCTTTCTCGCACAATCCAAGTTGCTCGCTTACCCGTAATTCTACCGATTTTGATTATTCCGTTAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGGACGAACGGGTCAGTTCATAGTCGGTTCAAGCCGATAGGCGATGGGGTTGCCTTGTCTAATCATGGTGGTGGTGGGTTTAATTCGATCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTTCCATCGGAATTGCCTGCCAGGCCAAGATATGAAGCTCAGTCAGGGGACTCGAGAGGAAGGAATTCTGAGAATCTGAGAGTATTGGAAGGTTTAGATAGTGGGAAAGTAAGGAAGCTTTCTAGGCCAGAGAAAATTCTCAGGGAGATCGTGTTGGAGTCTGTTCCAACCATGGCTGCTCAGTTTCAAGAGCTTACTGATGAAGTGATTGCATCCACTAAGGAATACTTAAAGAATTTCATTGAGATGCCCGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAATCAGCTTGAGCGAAGATCTGACCTTAATAAGGAGACTCTTTCGAAGTGCCAAAAGGGGCAGCTTGAGATTTTAGTTGCTATCAAGATGGGGCTTGCAAGCTTCTTGTCTGGCAAAGTCCACTTCTCCGAGATGGTGGAGATTTTCTTGCATTTGAGATGTAGAAATTTGAACTGTAGGAACTTGCTGCCTGTTGATGACTGTGACTGCAAGATTTGTTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTCTGAACTTTGATTGTGCAAGCAACACGTGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGCGGCATTAAGAGGAATCTCATCAAACCTGGGCCTAGCTTGAAGGGGCCATCAGGGACCACTGAGATGCAGTTTCATTGTAGTGGATGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAGAGATGTGTTCATTTGTTGTGCAAAGGATTGGGGCCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTGAGGAAGATTTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTCAAAACTGATGACATGCTTTTTAAGCTTCAAACTAAAACCGGGTCACCTTTGGATGCCTGCAACTATATCCTACAATTTTTCAACTATGCAGATAACATGCCAGACTTTCCTGCTTCTGGTATATCCTCAAAGGATTTGTCAGCTTCTCAAGCTAATCTTAGGAAGGAAGCAATCTCTCTTTCTCAATCTAATTCTCTAATGTCAAAGTATACTTATAACTCGGGCTATTCAAGGTCACAATGTGATGTTCTGTCAAATGATCATCATCAGAAAGATCTCAAAACTTCTATCTTAAGTGAATTGAAAAATGAGAGTGATTTCCAGCTGGGGGCTCTGTTAAGAAAAGGTGGGTTTGATAACTTGGAGAGCATCGTGAGGATTAAGGAAGCAGAAGCCAGAATGTTCCAAACCAAGGCAAATGAAGCCCGGAGAGAAGCCGAAGGGTTCCAGAGGATGATAAGGATGAAAACGGCGCAGATGGAAGAAGAATATGCTGAAAGGCTTTCCAAGCTCTCTCTTCAAGAGACTGAGGAAACGCGGAGTAAGAAACTGGAGGAACTGAAGGTCTTGGAAAATTCCCATTGTGATTACTTTAAGATGAAAATGAGAATGCAAACTGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 3378 0.4399 MTLPPAWILVYNALQMELARNHMLLWFFILNVIGDERSLKYHIELEACSYSIGRKVAFMICMIEKLTIYNIIHLNMMTPNLNLEPENHSEVSSQVASNISLQETSHDLTKDSNTTSSCFTNLTKPETDPMSFSLDLTLNFNSGDGELKRMSDASSEVGAETQPSGSAVPRVFSSHSAMHQRHMPSLRAPNLRAGAKFEKDYFGSPVFMEDDDNMGPFWPGSFWQVEGRAGVVFDRMFQVDVMEFVEIPVRDVNLVKSRPTLFTIXPELWRFEESILQSPKKGKIPTHCPRFSVHFPNYPLVLSPPCSVYLSVWGKPLSPPSLYLWLVASAMIGGKDLPNGLDSDGENSRSKLSKPNFTRGKENLEQKLGYPVKGAYFLKDSEEGGDGLLLKPSKVGTSGLQELTLSYLCDKEIPGKSLLSSLEKVRCKGKEVLISEDSNQDEKWVERDFLNLSETRENSSKRSVEEEVERENKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPLRPKPSKPSATTYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGFNSIMQGNNSQYKTTSSDNHSFFPSELPARPRYEAQSGDSRGRNSENLRVLEGLDSGKVRKLSRPEKILREIVLESVPTMAAQFQELTDEVIASTKEYLKNFIEMPEKKEELVSLQNQLERRSDLNKETLSKCQKGQLEILVAIKMGLASFLSGKVHFSEMVEIFLHLRCRNLNCRNLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSGTTEMQFHCSGCGHASEMFGFVRDVFICCAKDWGLETLVKELDCVRKIFKGSEDRKGKELHVKTDDMLFKLQTKTGSPLDACNYILQFFNYADNMPDFPASGISSKDLSASQANLRKEAISLSQSNSLMSKYTYNSGYSRSQCDVLSNDHHQKDLKTSILSELKNESDFQLGALLRKGGFDNLESIVRIKEAEARMFQTKANEARREAEGFQRMIRMKTAQMEEEYAERLSKLSLQETEETRSKKLEELKVLENSHCDYFKMKMRMQTEIAGLLERMEATKQQWV 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1371 1125 MobiDBLite consensus disorder prediction 595 616 - -
Lele53g1371 1125 Coils Coil 1027 1047 - -
Lele53g1371 1125 MobiDBLite consensus disorder prediction 498 521 - -
Lele53g1371 1125 CDD PHD_OBE1_like 793 852 - -
Lele53g1371 1125 MobiDBLite consensus disorder prediction 155 169 - -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 715 730 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 676 698 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1021 1041 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 873 892 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 800 820 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1060 1082 IPR004082 -
Lele53g1371 1125 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 754 775 IPR004082 -
Lele53g1371 1125 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 435 1124 IPR004082 -
Lele53g1371 1125 MobiDBLite consensus disorder prediction 595 642 - -
Lele53g1371 1125 Pfam PHD - plant homeodomain finger protein 763 887 IPR032881 -
Lele53g1371 1125 MobiDBLite consensus disorder prediction 338 358 - -
Lele53g1371 1125 Coils Coil 1103 1123 - -
Lele53g1371 1125 MobiDBLite consensus disorder prediction 147 169 - -
Lele53g1371 1125 Coils Coil 1075 1095 - -
Lele53g1371 1125 Pfam Coiled-coil region of Oberon 986 1114 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1371 Lele-ChrLele53 21882068 21889587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1371 694 967 PHD Gene Family AT5G57380 22.517 1.25e-10 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1371 53 21882068 21889587 Lele55g0105 55 639513 643056 hybridization
Lele53g1371 53 21882068 21889587 Lele56g0106 56 1084584 1088050 hybridization