Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1370 ATGGGTAAGAAGAAGAAAAGGGTTTCTTCGAAGGTCTGGTGTTACTATTGTGATCGGGAGTTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAGACTATCCACTGCTGGTGGCATGGCCATTCATGTGCTCCAGGTTCATAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAAATATATGGGATGCAAGGGATTCCACCAGACATCTTGGCCGCCCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAACTCAGCTTGTAGTTGGAGTTGTGCCGGCACCATTAGGCATGGGATATCCTCCTCAGTCGACCTTGGGTACTATGCCACCTATTTATAATCCTGCAGTACCTATGCCACCTGCCAGTTGGCCAGTTCCACCTCGACCTCAACCTTGGTATCCCCAACCTCCATCTGTTTCCATTCCTCCTTCTGCCCCTTATGTACAGCTGCCATTATTTCCTGTTCAGAATGTGAGGCCACCTCTCCCATCAACCACCTCTCCTGCCCTTCCAACTTCTCAAGTTGCTCCTCCTGGATTGCCTCCAACATCTGCTCCTGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCATACAATGGCCCAAAGTTCAACATTTTCTGCCTCATCGCTTTCTAGCAGTGCTCCATCTCCATTGCCTGCAAGTGTCCCTGCTGATGGTTATTCAAGTGCCAACACAACTTTGACAAATAATTATCAAGCTCTAGGGGTTCCAGGAGGGACAGCAGGCAACTCGCATTCTTATGTTTCTGGTCCAAATACTGGCGGTCCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGTAACTCAACCTGCCACTAATGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGGATGTCCTTACCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCTATTGACGCGGCCATAGACAAAAGGATACTTCAAAGCAGACTAGCAGGTCGAATGGCTTTTTAG 1110 0.4694 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKRLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDEEDEAPSKAAKVDIPSTQLVVGVVPAPLGMGYPPQSTLGTMPPIYNPAVPMPPASWPVPPRPQPWYPQPPSVSIPPSAPYVQLPLFPVQNVRPPLPSTTSPALPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSASSLSSSAPSPLPASVPADGYSSANTTLTNNYQALGVPGGTAGNSHSYVSGPNTGGPSIGPPPVIANKAPVTQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILQSRLAGRMAF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1370 369 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lele53g1370 369 PANTHER ZINC FINGER PROTEIN 207 1 369 - -
Lele53g1370 369 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lele53g1370 369 MobiDBLite consensus disorder prediction 189 203 - -
Lele53g1370 369 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lele53g1370 369 Gene3D Classic Zinc Finger 1 66 - -
Lele53g1370 369 MobiDBLite consensus disorder prediction 189 212 - -
Lele53g1370 369 SMART c2h2final6 12 35 IPR013087 -
Lele53g1370 369 SMART c2h2final6 36 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1370 Lele-ChrLele53 21867223 21871335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1370 1 349 C2H2 Transcription Factor Family AT1G30970 65.097 1.07e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g1370 None None None