Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1351 ATGGCTGCTTTGCACAGAGTGACACAGTCAAGCATGACCACCAGTGTAAGCAGCTACGGCACCTGCAAAGGTGGTGGTGCTGCAGCTATTGAGAAGGCGGTTCCTGATAAGTTCCCACTTGGTCTGAGGGTTCTCGTCGTGGACGATGACATCACTACTTTGAAAATCATCGAACAAATGTCTCTTAAGTGTCATTATCGGGTCACCACATGTTCTGAGGCTACTGTCGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGCTTTGATGTAGTACTGAGTGATGTTTATATGCCTGACATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCCGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAATAAAGAACACGAAAATTCTGGCAGCTTGGAAGATAATGACAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCGTCTGTAATTGATGCGGCTGAAGTAGTTAAGGTGCCAAAAAAGAGGATGAGTTCAAAAGAAGATGATGATGGTGAACTAGAGAATGACGATCCATCCACATCTAAGAAGCCCCGTGTGGTCTGGTCGGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTTGGGCTTGACAAGGCTGTACCAAAGAGAATTCTGGAACTGATGAATGTCCCGGGTTTGACAAGAGAAAATGTTGCAAGTCATCTTCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAACAGAATGGAATTCCAAACACAGTCTCTGGGTCTATGGAATCCAGACTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTTCTGCCTGTCAAGTTCCTCCTCAAACACTAGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCAGTCACTGGCTTGGTGTCAACAGTGGACCAGACTGCTCTTCTGCAAGTTTCCATACAGGGCCCCAAGCATTCCCCTGCAGAACATGCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGATGCATCTTCAGGCTATGGAGCATGGCCACCATCTGATACAATTGGTTCAATGGGACCCAATAGTAATCACGGAAGGTTGAGTGTTCAAAATAATAACATGCTGATGGATATACTGCAGCACCATCAATGGCAACAGTTCCCGCAAACACAGCAGCATAAACTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCAATCAATGTTGAACCATCTTGCTTGGTGTCTCCCTCTCAAACTTCAGGCACTTTCCAGGTTAACGGTCCTGCTTCTGCTTCTGTCAACCAGAATTCCAATTTGGCTAGGAATGCCCTTATGGATTATAGTCTCTTTGCACCCGAATCGAATCATCCTTCATTAAATATTGCTCAATTTCCTGGTGGGGACACCAAAGCTAAAGGTGTTCTTTGTGGATATATGGCTTCAGGCTCCATTTCGCATTCAACATCATCGCATTCAATAAGTGCTAACAATAACAATATCCAACAGCTTCACAACTCATCTTTGACATTCGGAACTGTGGGACCTTTGCCAACTCTCTCATCAAACGTGTCTGATCCACAAGTTCCCTATGGTGGTACTATATCTGGTGATGCCATTGACCAAGCACATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCAAATTAGGTTTGCTGCTCACGAAATGGAACCATCTGTCCGTGACTTAAGTCAGGGAAAAATCCCTATAGATGGCAATGCTAACACAGTGAAGCAGGAGCCAAACATGGATTTTATGGATAACTCCAAAGTGGGCGCCAAAGTCTTACAAAGATATCCATCTGATCCCATGAATGTGTTCACTGAATAG 2028 0.4413 MAALHRVTQSSMTTSVSSYGTCKGGGAAAIEKAVPDKFPLGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKQGNDDTEYASSVIDAAEVVKVPKKRMSSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTVSGSMESRLGGLGRLDIQALASACQVPPQTLAALHAELLGRPVTGLVSTVDQTALLQVSIQGPKHSPAEHAVAYGQPLVKCPSNIAKNFPQSILTVDDASSGYGAWPPSDTIGSMGPNSNHGRLSVQNNNMLMDILQHHQWQQFPQTQQHKLQQQSLMHDQSRSINVEPSCLVSPSQTSGTFQVNGPASASVNQNSNLARNALMDYSLFAPESNHPSLNIAQFPGGDTKAKGVLCGYMASGSISHSTSSHSISANNNNIQQLHNSSLTFGTVGPLPTLSSNVSDPQVPYGGTISGDAIDQAHVRNLGFVGQGSSIQIRFAAHEMEPSVRDLSQGKIPIDGNANTVKQEPNMDFMDNSKVGAKVLQRYPSDPMNVFTE 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1351 675 Gene3D - 223 286 - -
Lele53g1351 675 Gene3D - 42 218 - -
Lele53g1351 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 434 IPR045279 GO:0009736
Lele53g1351 675 SMART REC_2 42 154 IPR001789 GO:0000160
Lele53g1351 675 FunFam Two-component response regulator 223 286 - -
Lele53g1351 675 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Lele53g1351 675 MobiDBLite consensus disorder prediction 167 185 - -
Lele53g1351 675 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Lele53g1351 675 FunFam Two-component response regulator 42 179 - -
Lele53g1351 675 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Lele53g1351 675 MobiDBLite consensus disorder prediction 199 213 - -
Lele53g1351 675 CDD REC_typeB_ARR-like 44 158 - -
Lele53g1351 675 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Lele53g1351 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Lele53g1351 675 SUPERFAMILY CheY-like 41 166 IPR011006 -
Lele53g1351 675 MobiDBLite consensus disorder prediction 167 226 - -
Lele53g1351 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1351 Lele-ChrLele53 21712787 21716445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1351 76 354 Response Regulator Gene Family AT3G16857 53.115 3.44e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele53g1351 Response_reg 2.7e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1351 53 21712787 21716445 Lele55g0127 55 822624 823376 hybridization
Lele53g1351 53 21712787 21716445 Lele56g0129 56 1247654 1254449 hybridization