Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1349 ATGGCGATGGCGAGGGAGATGGAGGAGGATGGAGACGTACAGAACAACGCGGGGAAGAGGCTGAAGTGCATGAAGAATGAGGAAAAGGGTCAAACAGAGGAGGAAGCTGTGGAGGATAAAAGTGAGCTTCCTCTCCAGCCCGGTCTCTTCTTCTATCCAACCACTCCTACGTCTTTCTTAGTCTCCGATGCTCTTGAACCCGATTTTCCCATCATCTATGTCAACAAGGTCTTTGAATTCGTCACTGGCTATCGTGCCGATGAGGTTTTGGGTCGGAACTGTCGGTTCTTACAGTATAGGGACCCTCATGCTCAAAGGAGGCACCCGTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGCATTCCTTTAGTGAACAGGCTGAGACTTGCTCCAATTCATGATGATGATGGAACTATGACACATGTAATAGGCATCCAGCTATTTTCTGAAGCAAATTTAGATCTAAATCGTGTCTCATATCCGGTGTTCAAGGAGACCTGCAGTCAGGAAATTGATAAGACTGGTAAAAATTCTCCTAAGAGTGGACAACCAATATACCGCCAGCACCAAGAGATGTGTGGCATTCTTCAGCTCTCTGATGAGGTCTTGGCTCATAACATCTTATCACGCTTGACACCAAGAGATGTTGCATCAATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACGCTGAATGAGCATGTTAGAAAGATGGTGTGTCAAAATGCCTGGGGAAAAGAAGTGACTGGTACATTGGAACTGATGACCAAGAAACTAGGATGGGGTCGTCTTAGCCGAGAACTGACCACTCTTGAGGCTGTTCGTTGGAGAAAACTGACAGTTGGAGGTGCAGTAGAGCCTTCACGCTGTAATTTCAGTGCTTGTGCTGCAGGAAATCGCCTTGTATTGTTCGGAGGTGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGTAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCCTGCTTAAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGTAGGGAAGGATTGCTTAATGACGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTCTGTGGTGGAACTCCGCCTCTCCCTAGATCTTGGCACAGCTCTTGCACCGTTGAAGGGTCTAAATTGGTAGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATACCTACTGGACCTTACTACGGATAATCCAACATGGAAAGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGGTTGGGGCACTCGCTCTCTGTATATGGCAGGACAAAAATTCTCATGTTTGGCGGACTTGCCAAGAGTGGACACTTGCGATTACGATCAGGGGAGGCTTATACGATTGATTTGGAAGATGAAGAGCCTCAGTGGAGGCAGCTAGAATATAGCACATTCTCTGGAATAGGTGGTCAAAGTGCCGTGGTTCCTCCACCTCGGCTAGATCATGTCGCAGTGAGCATGCCTTGTGGGAGGATTATTATTTTTGGAGGCTCCATAGCAGGGCTGCACTCTCCATCCCAGCTCTTTCTTTTGGACCCATCTGAGGAGAAACCATCATGGAGGATCCTCAATGTGCCAGGGCAACCGCCAAAATTCGCTTGGGGTCACAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGTCATACAGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCAAGCAGGACTCCGACCTTAGGTGA 1890 0.4762 MAMAREMEEDGDVQNNAGKRLKCMKNEEKGQTEEEAVEDKSELPLQPGLFFYPTTPTSFLVSDALEPDFPIIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGIPLVNRLRLAPIHDDDGTMTHVIGIQLFSEANLDLNRVSYPVFKETCSQEIDKTGKNSPKSGQPIYRQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTLNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVRWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWKEIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSTFSGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASKQDSDLR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1349 629 Gene3D - 492 623 IPR015915 GO:0005515
Lele53g1349 629 Gene3D - 367 491 IPR015915 GO:0005515
Lele53g1349 629 Gene3D PAS domain 52 177 - -
Lele53g1349 629 FunFam Adagio protein 1 48 177 - -
Lele53g1349 629 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Lele53g1349 629 TIGRFAM sensory_box: PAS domain S-box protein 70 165 IPR000014 -
Lele53g1349 629 FunFam Putative LOV domain-containing protein 286 491 - -
Lele53g1349 629 Pfam Galactose oxidase, central domain 374 420 - -
Lele53g1349 629 Pfam Galactose oxidase, central domain 423 474 - -
Lele53g1349 629 Pfam PAS domain 65 165 IPR000014 -
Lele53g1349 629 Gene3D - 205 301 - -
Lele53g1349 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Lele53g1349 629 SUPERFAMILY F-box domain 208 267 IPR036047 GO:0005515
Lele53g1349 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 35 622 - -
Lele53g1349 629 CDD PAS 55 165 IPR000014 -
Lele53g1349 629 SUPERFAMILY Galactose oxidase, central domain 295 613 IPR011043 -
Lele53g1349 629 FunFam Putative LOV domain-containing protein 492 624 - -
Lele53g1349 629 Pfam F-box domain 215 250 IPR001810 GO:0005515
Lele53g1349 629 MobiDBLite consensus disorder prediction 1 41 - -
Lele53g1349 629 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Lele53g1349 629 Pfam Galactose oxidase, central domain 309 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1349 Lele-ChrLele53 21697301 21700660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1349 54 167 AGC Kinase Gene Family AT5G58140 42.105 4.80e-21 96.3