Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1338 ATGAACCAAATCCGAGCCAGGCCTAAAAAGAGAACGAGTGATGATCGTCAAGTGACATCATCATCGTTAGACGCAAAACGTGACTCACTTCCAAAACAGCTACTCCTCCATTTATCGCTCCTGCTCTGCATTAAGCTGAATACCTATCCCTTTCCTCCATTTGTAATTGTGAAGAACTTCTTCCCAGCTTCAAAGAAATCGTCCATGGCTCATCATTGTCACCCACGTAATGCTATCCGTTTCTTCAAGATCATTCTCGAATATTCTCTTCAAGAAGGAAAGCTTAAATTACCAGACAACTTCATACGAAAATATGGAGGTGGCATGCCAAATCCAGTGTGCCTGAAGCCACCAGATGGAACTGAATGGGAAATACATTGGACAAAATATCAAAGTGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTGAGATACTACTCTTTAGGCCATGGCCATTTGGTGTTGTTCAGATATGAGGGAACTAGAACTACTTGTTGCTTTGAGGTCAACATTTTTGACAAGAGTGCATCTGAAATAGACTACCCTCTTCATGGAAACCTCCAACTGATTCACGATTATTCTGATTCACTTGAAATCTTGCATGAGATACCTCCTCTGCATAAAGGAGCTAGCCGGAAACCTCCATTACCATCTTCTAGTCTCCCTTCCAAGAAAATTAGAGCTGGAGAAGCTGAAAGGATGTCTAATAATCAAAAGATGCACTCAGATGGGAATAAGCTCAAGTTCGCTAAAGCAGAACCGTATCTTATCAAGCTTGAATCACAAGGAACTGTGGGTAGAAGCAATTTTTCCACTAAAAAAAGCCTAAAATCCATGGATATTAAAAAGCTAGAGGAGAAACCACTAACTTATGATGAGAAGGAGAGAGCTTTACATAGAGTCAACACTTTCACGGCCAAAAATCCCTATTTCAAAATTGTCATACAGCCAGCATACATCAAGAACTGTTTGAGTGTGCCAGCAAATTTTGTGGAACAGTATTTGAAGCAGAAGAGGGAAGGGGTTGTTCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGAGTGAGGTTCTGGGAATCCATATGGCTGAAAATTCCAAGGCAACATGTTGCAGAGAAGGAGGGAGATTGCGATGATACATGCAGCTGGGGAAGATCCGCTTTGAGCATGGAGGAAAATCAGGAAAGAGCAAATAATCAAGGGGTGAGGGCAAGAGCAGTTCTGAAGAAGGCCGAGGAAGAATCTCAAGAAAAAGATATCGATTTAAACTTAAAAATTGGTTCTTCGGAGCCTTGTCTCTTCTTTGGATCTAGAGTTTTAGAAGCAATATTGTTAGAGAGAACACCAACTCATTTTGATCTCTGGTTGAAATACCAACTAATTTCAGTCTTCTTGTTGAGTGCATTAGAAATAGACTACCCTCTTCATACAAACCTCCAACAAATTAATGATGATGCTGATTCAGTTGAAATCTTGCATGAGAAACCTCCTCTGCATAAAGTAGCTTGCCAAAAACGGCCATTATCATCTTCTAGTCGCCCTTGCAAGAAAATTAGAGCTGAAGAAGCTGAAAGGACGTCTAATCAGCAAAAGATGCACTCAGATGGGAATAAACTCAAGTCCATTAAAGCAGAACCGGATCTCATCAAGCTTGAATCAGAAGGTAGCTTCTTGTCGTCCATCATTATTGCGAAGAACTGCTTCCCCGCTTCAAAATTGCCCATGGCTCCTCATTGTCACCCCCGTAATGCTATCCATTTCTTCAAGGTTATTCTCGAATATTCTCTTCAAGAAGGAAAACTTAAAGTACCGGACAGCTTTGTACAAAAATATGGAGGCGGTATGCTAAATCCAGTGTTTCTGAAGCCTCCAGATGGGACTCAGTGGGAAATACATTGGACAAAATATGAAAGTGGCGAGGTTTGGTTTGAGACGGGTTGGGATGAAGTTGTTAGATACTACTCATTAGGTCATGGCCATCTGGTGTTGTTCAGATATGAGGGAACTAGAACTTGTTACTTTGAGGTCAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCATACAAACCTCCAACAAATTAATGAAGATTCTGGTTCAGTTGAAATCTTGCGTGAGAAACCTCCTCCGCATAAAGTAGCGAGCCAAAAACCGCCATTATCATCTTCTAGCCGCCCTTGCAAGAAAATTAGAGCTAGAGAAGCTGAAAGGATGTCTAATCAACAAAAGATGCACTCAGATGGGGATAAGCTTAAGTCCATTAAAGCAGAACCGAAACTTATCAAGCTTGAATCAGAAGTTTCTGCAGAAACCGTGGGTAGAAGCAATATTTCCACTAAAAGAAGTCCAAAATCCATGGCTATTAAAAAACGAAAGGAGAAACCATTAACTTGTGATGAGAAGGACAGAGCTTTACAGAGAGTCAACATTTTCACGCCCAAAAATCCGTATTTCAAAATTGTCATGCAACCATCATACATCAAGAGCAATTTGTGGGTACCAGCAAGTTTTGGGAAACAGTATTTGAAGCAGAAGAGGGAAGGAGATGTCCTCCTCCGGGTTTCAGATGGTAGAACATGGCGTGTGAAGTGCAATAGGCAAGAAGGAAATCAGCCTAAGTTCCGACTCAACCGCGGGTGGACCTCTTTTGCAAATGACAATAACTTGAATGTGGGCGATGTGTGTGTTTTTGAACTCACAAACGCCGTTAACGTCTCCTTCATAGTTCATGTCTTTGGAGATTCTGCTAGTCCATATGGCCAAAAATTCCAAGGAAGGGCAAGATTATGGGCTGTGAAGTTTCTTTTGTTAGCTTTATTTGAACAATTCACACGGCAAGATCCAAATAAGAGTCTGTCCTTGCAAGCCCTCGATCCGCACCCGAGGACTCCAATTGCCGCCGGTAGCCACCGTCCCGCCTTTTGGCCGTGCTTTTGCTGCGGAAATTCAGTCAACAGCCTTGTCATAATGGCTGCAATCTTAGCTCGGAAATCACTTCTTGTTCTTCGCACTCGACAATTGGCTGTGGCAGGTCAAGGGTTGCAAGGTCCACAAAATTATGGCTTGCGATTGAGTGCTCATTCATACTCTACCAAAAAAGATGATGAAGAAAGGGAGCAACTTGCAAAGGAAATTTCCAAGGATTGGAGTTCTATCTTTGAACGCAGCATCAACACACTATTTCTCACTGAAATGGTTCGGGGTTTAAGTCTGACGCTGAAATACTTCTTTGAGAAGAAAGTCACTATAAATTATCCATTTGAGAAGGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGACGATATCCAACTGGAGAGGAACGTTGCATTGCTTGCAAACTTTGTGAAGCTATATGTCCGGCACAAGCAATCACAATTGAAGCTGAGGAGAGAGAAGATGGCAGCCGCAGGACAACAAGGTACGATATTGACATGACCAAGTGCATCTACTGCGGATTTTGTCAAGAGGCATGCCCCGTTGATGCCATTGTTGAAGGGCCAAACTTTGAATTTGCTACAGAAACTCACGAGGAGCTTCTGTATGACAAAGAGAAGCTACTTGAGAATGGGGACCGATGGGAAACTGAGATTGCAGAGAACCTGAGATCTGAAAGCCTGTATCGCTGA 3651 0.4254 MNQIRARPKKRTSDDRQVTSSSLDAKRDSLPKQLLLHLSLLLCIKLNTYPFPPFVIVKNFFPASKKSSMAHHCHPRNAIRFFKIILEYSLQEGKLKLPDNFIRKYGGGMPNPVCLKPPDGTEWEIHWTKYQSGEVWFEKGWDEVVRYYSLGHGHLVLFRYEGTRTTCCFEVNIFDKSASEIDYPLHGNLQLIHDYSDSLEILHEIPPLHKGASRKPPLPSSSLPSKKIRAGEAERMSNNQKMHSDGNKLKFAKAEPYLIKLESQGTVGRSNFSTKKSLKSMDIKKLEEKPLTYDEKERALHRVNTFTAKNPYFKIVIQPAYIKNCLSVPANFVEQYLKQKREGVVLLRVSDGRTWRVRFWESIWLKIPRQHVAEKEGDCDDTCSWGRSALSMEENQERANNQGVRARAVLKKAEEESQEKDIDLNLKIGSSEPCLFFGSRVLEAILLERTPTHFDLWLKYQLISVFLLSALEIDYPLHTNLQQINDDADSVEILHEKPPLHKVACQKRPLSSSSRPCKKIRAEEAERTSNQQKMHSDGNKLKSIKAEPDLIKLESEGSFLSSIIIAKNCFPASKLPMAPHCHPRNAIHFFKVILEYSLQEGKLKVPDSFVQKYGGGMLNPVFLKPPDGTQWEIHWTKYESGEVWFETGWDEVVRYYSLGHGHLVLFRYEGTRTCYFEVNIFDKSALEIDYPLHTNLQQINEDSGSVEILREKPPPHKVASQKPPLSSSSRPCKKIRAREAERMSNQQKMHSDGDKLKSIKAEPKLIKLESEVSAETVGRSNISTKRSPKSMAIKKRKEKPLTCDEKDRALQRVNIFTPKNPYFKIVMQPSYIKSNLWVPASFGKQYLKQKREGDVLLRVSDGRTWRVKCNRQEGNQPKFRLNRGWTSFANDNNLNVGDVCVFELTNAVNVSFIVHVFGDSASPYGQKFQGRARLWAVKFLLLALFEQFTRQDPNKSLSLQALDPHPRTPIAAGSHRPAFWPCFCCGNSVNSLVIMAAILARKSLLVLRTRQLAVAGQGLQGPQNYGLRLSAHSYSTKKDDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1338 1216 TIGRFAM NuoI: NADH-quinone oxidoreductase, chain I 1073 1194 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lele53g1338 1216 PANTHER B3 DOMAIN-CONTAINING 584 907 - -
Lele53g1338 1216 Coils Coil 396 416 - -
Lele53g1338 1216 SUPERFAMILY DNA-binding pseudobarrel domain 307 360 IPR015300 -
Lele53g1338 1216 FunFam NADH-quinone oxidoreductase subunit I 1 1090 1213 - -
Lele53g1338 1216 Gene3D - 74 178 IPR015300 -
Lele53g1338 1216 Gene3D - 582 685 IPR015300 -
Lele53g1338 1216 CDD B3_DNA 311 360 IPR003340 GO:0003677
Lele53g1338 1216 MobiDBLite consensus disorder prediction 1 24 - -
Lele53g1338 1216 SMART B3_2 589 684 IPR003340 GO:0003677
Lele53g1338 1216 SMART B3_2 81 177 IPR003340 GO:0003677
Lele53g1338 1216 SMART B3_2 822 920 IPR003340 GO:0003677
Lele53g1338 1216 MobiDBLite consensus disorder prediction 779 800 - -
Lele53g1338 1216 SUPERFAMILY DNA-binding pseudobarrel domain 816 918 IPR015300 -
Lele53g1338 1216 CDD B3_DNA 80 175 IPR003340 GO:0003677
Lele53g1338 1216 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1064 1200 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lele53g1338 1216 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1147 1176 IPR017896 -
Lele53g1338 1216 CDD B3_DNA 588 682 IPR003340 GO:0003677
Lele53g1338 1216 CDD B3_DNA 821 917 IPR003340 GO:0003677
Lele53g1338 1216 ProSiteProfiles B3 DNA-binding domain profile. 588 684 IPR003340 GO:0003677
Lele53g1338 1216 MobiDBLite consensus disorder prediction 7 22 - -
Lele53g1338 1216 Pfam B3 DNA binding domain 822 917 IPR003340 GO:0003677
Lele53g1338 1216 Pfam B3 DNA binding domain 83 176 IPR003340 GO:0003677
Lele53g1338 1216 Pfam B3 DNA binding domain 590 683 IPR003340 GO:0003677
Lele53g1338 1216 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 1117 1128 IPR017900 -
Lele53g1338 1216 Gene3D - 1090 1215 - -
Lele53g1338 1216 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1108 1137 IPR017896 -
Lele53g1338 1216 ProSiteProfiles B3 DNA-binding domain profile. 821 920 IPR003340 GO:0003677
Lele53g1338 1216 SUPERFAMILY DNA-binding pseudobarrel domain 79 177 IPR015300 -
Lele53g1338 1216 Pfam 4Fe-4S dicluster domain 1116 1170 IPR017896 -
Lele53g1338 1216 SUPERFAMILY 4Fe-4S ferredoxins 1090 1200 - -
Lele53g1338 1216 Gene3D - 291 375 IPR015300 -
Lele53g1338 1216 Gene3D - 801 920 IPR015300 -
Lele53g1338 1216 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 1156 1167 IPR017900 -
Lele53g1338 1216 SUPERFAMILY DNA-binding pseudobarrel domain 586 684 IPR015300 -
Lele53g1338 1216 ProSiteProfiles B3 DNA-binding domain profile. 80 177 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1338 Lele-ChrLele53 21629541 21640984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1338 589 917 B3 DNA Binding Superfamily AT3G18990 29.345 5.76e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele53g1338 B3 4.9e-19 CL0405