Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1336 ATGGAGGGAACACGCAGTTCACTTGCTATGCCTGGCATCACTCATAAAGACAGGAGATTATCTGCCCACGCATGTTCTGACATGGATCATAGACATATCACAAAAGGATCTGTAAAAGCGGATGTCGATGCCGATGTCGCCCCAGGAGTGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGTGTTGATTTGGACGCTCTTCTTGACATGTCCACTGATGAGCTTGTCAAGCTCTTTACTGCCCGAGCTCGCAGAAGGTTTCAGAGAGGACTGAAGAGGAAGCCTATGGCCTTGATTAAGAAGCTGCGCAAAGCGAAAAGGGAGGCTCCACCAGGTGAGAAGCCAGAACCAGTTCGCACCCACCTGCGGAACATGATCATTGTACCTGAGATGATTGGGAGCATCATTGGAGTGTACAATGGCAAGACTTTCAACCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACTTAGCTGAGTTCTCAATTTCGTACAAGCCCGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCATCAAGGTTCATTCCTCTCAAGTGA 570 0.4842 MEGTRSSLAMPGITHKDRRLSAHACSDMDHRHITKGSVKADVDADVAPGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1336 189 SUPERFAMILY Ribosomal protein S19 93 173 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 TIGRFAM uS19_arch: ribosomal protein uS19 56 189 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lele53g1336 189 PRINTS Ribosomal protein S19 family signature 122 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 PRINTS Ribosomal protein S19 family signature 142 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 PRINTS Ribosomal protein S19 family signature 154 169 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 ProSitePatterns Ribosomal protein S19 signature. 142 166 IPR020934 GO:0003723
Lele53g1336 189 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 49 189 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 FunFam 40S ribosomal protein S15 46 189 - -
Lele53g1336 189 Hamap 30S ribosomal protein S19 [rpsS]. 85 178 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 Pfam Ribosomal protein S19 87 172 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele53g1336 189 Gene3D 30s Ribosomal Protein S19; Chain A 48 189 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1336 Lele-ChrLele53 21619834 21623461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1336 47 189 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.811 2.72e-90 259