Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1328 ATGGACGACATGAAGGATAAATTAAAAGGTTTCATGAAGAAAGTCTCTCAGTCACCCTCCGGTAAATTCAAGGGCCAGGGAAGAGTTCTGGGATCATCCCCATCCCCATCCCCATCTTCTACATCCAGCAGTTCTATTCTTCTCCATCCTACGCAGAATTTGGGTCCAAAACCAAGTTCTGCATTGGCGAACTCTCGACCGTTGCCCCAGAAAACGATCGATTCGAATTCAAATAGGAAGGAAGGTTCGAGTAAGTCCATCCCTGATCGCAAACCGGGTAACGGGTTCGACCCTTATGATTCATTGATGACTACTGGGAAGAGATCTAAAAATGGGTTTTCTTTGAATGTGTATGAATGTCCGATTTGTGGGGAATCGTTTAGGTCCGAGGAAGAGGTGTCTATACATGTGGATACATGTCAGGGTAACCCAGTTGACCGTGATGACAGAAATGGCGTTTCACAATTACCTGACAATGGATTTCAGTCAAGAGATCAATTGGAGGCTTGCATCAGTACGTATATGTCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTTCTTAAACTGTTGAGGAATACTGTAAAGGAACCAGAAAACGCAAAGTTTAGGAAAATTAGGTTGACTAATCCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGAGGAATTAAGCTGCTGAGCTGTGTAGGATTTGAGCTAAAGGAGGAGGATGGAGTGAGATGGGCACTGATGGAAGTTCCCACGGAAGAGCAAATAAAATTGATTAAGAAAGCAATAGCATTATTGGAATCACCGGTACTACAAGAAACTGGAAAGAGAGAACATTTGGCATCTGAAACATGTGCTGAGATGGATGAAGAGGCAGAACCTAAAAAGGTGGACAGACAGTTAAAGGTCTTCTTCGGTGTACCAGAAAGCATTGCATCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGAGAAGCTGAATTGAGGAGGAAAAAAATTGCGGATTCTCAGCTTTTAATCCCCAAGTCGCTAAAAGAAAAGCAAGCAAAAGCTGCTAGGAGGAGATACAGAAAAACTATGATTCGTATCCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACAACTGCTTTATATGAGTTTGCCAGCTCCGCATTGAAAGAACCATGTTTGGAATTTGACCTAATGCATCCTGTACTTGTTCAACGACGGGTCATCCCTCACTTCCCTCGAGCAGGGGAGAAAGCTGTAACACTAGAGGATGAGGACCTGGTGCCTTCAGCTCTCATTAAGATGAAACCACATGAAACGGATTCTGTTGTTTACACTGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCGCTCTCATGA 1404 0.4323 MDDMKDKLKGFMKKVSQSPSGKFKGQGRVLGSSPSPSPSSTSSSSILLHPTQNLGPKPSSALANSRPLPQKTIDSNSNRKEGSSKSIPDRKPGNGFDPYDSLMTTGKRSKNGFSLNVYECPICGESFRSEEEVSIHVDTCQGNPVDRDDRNGVSQLPDNGFQSRDQLEACISTYMSGKPSEGSVEVVLKLLRNTVKEPENAKFRKIRLTNPKIKEAVSEVAGGIKLLSCVGFELKEEDGVRWALMEVPTEEQIKLIKKAIALLESPVLQETGKREHLASETCAEMDEEAEPKKVDRQLKVFFGVPESIASKIELPDSFYNLSIDEVKREAELRRKKIADSQLLIPKSLKEKQAKAARRRYRKTMIRIQFPDGVVLQGVFNPWEPTTALYEFASSALKEPCLEFDLMHPVLVQRRVIPHFPRAGEKAVTLEDEDLVPSALIKMKPHETDSVVYTGLRNELLEISEPLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1328 467 MobiDBLite consensus disorder prediction 30 82 - -
Lele53g1328 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Lele53g1328 467 Pfam PUB domain 181 256 IPR018997 -
Lele53g1328 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Lele53g1328 467 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Lele53g1328 467 SMART PGNneu 182 249 - -
Lele53g1328 467 CDD PUB 176 265 - -
Lele53g1328 467 FunFam UBX domain-containing protein 6 352 443 - -
Lele53g1328 467 MobiDBLite consensus disorder prediction 1 108 - -
Lele53g1328 467 Gene3D - 172 275 - -
Lele53g1328 467 SUPERFAMILY PUG domain-like 180 261 IPR036339 -
Lele53g1328 467 Gene3D - 352 445 - -
Lele53g1328 467 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1328 Lele-ChrLele53 21585125 21588274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1328 1 390 C2H2 Transcription Factor Family AT2G01650 54.975 2.30e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g1328 PUB 4.3e-16 No_clan